BtaINT0062512 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34977901-34978337:-
Coord C1 exon
chr18:34978145-34978337
Coord A exon
chr18:34978064-34978144
Coord C2 exon
chr18:34977901-34978063
Length
81 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
ACCCCTTTCCCCCTCTCTAGACA
3' ss Score
10.84
Exon sequences
Seq C1 exon
GTTCCATGCCTTCCTGCTGTACCTGGGGTACACGGCAGAGGCAGCCCGTGAGGTCCGCATCATGCAGTTTTGCCACACGCTGCGGGAGTTCGCACTGGAGTATCGGACCTGCCGGGACCGGGTGCTGCAGCAGCAACAGAAGCGGGCCACATACCGTGAGCGCAACAAGACTCGGGGACGTATGATCACTGAG
Seq A exon
GTGGGTGTGCCTTCCAGTCTTGACTGCCACCCCCGTGGTTTTCTTCTTCTACACCCCATTCACCCCTTTCCCCCTCTCTAG
Seq C2 exon
ACAGAGAAGTTCTCAGGTGTGGCTGGGGAAACCCCCAGCAAGCCATCTGTCCCTGTGGCTGTGAGCAGTGGGCCAGGAGAAGGTGATGCTGATAGTCACGCCACCATGAAGAGTCTGCTGGCCAGCAAGCCTGAGGATGCCACACATGGCCGTCGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427:ENSBTAT00000063472:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCGCATCATGCAGTTTT
R:
CCAGCCACACCTGAGAACTTC
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development