RnoINT0061044 @ rn6
Intron Retention
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37285587-37286026:-
Coord C1 exon
chr19:37285834-37286026
Coord A exon
chr19:37285750-37285833
Coord C2 exon
chr19:37285587-37285749
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCCTTTTTTCCCTGTTTAGACA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GTTCCACGCCTTCCTTCTCTACTTGGGCTACACCGCACAGGCAGCAAGGGAAGTACGCATCATGCAGTTCTGTCACACGCTCAGAGAGTTTGCACTTGAGTATCGGACTTGTCGGGAGCGGGTACTGCAGCAGCAGCAGAAACGGGCTACATACCGCGAACGCAACAAGACCCGGGGTCGCATGATTACTGAG
Seq A exon
GTGAGTGCCCACCCCTTACAGGTCTTTCCTGCCACTTCATAGTTCCTTTTCCTTGCTCCTAACCACCCTTTTTTCCCTGTTTAG
Seq C2 exon
ACAGAGAAGTTCTCGGGTGTGGCTGGGGAGGTCCCCAGTAACCTGTCTGTCCCAGTGGCTGTGGGCAGCGGGCCAGGTCGGGGTGATGCTGACAATCATGCCAGTATGAAGAGTTTGCTTACCAGCAGGCCAGAAGACGCCACACACAGCCGACGTAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625:ENSRNOT00000084734:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.836
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCAGCAAGGGAAGTAC
R:
CCACACCCGAGAACTTCTCTG
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]