MmuINT0064473 @ mm9
Intron Retention
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107853747-107854187:-
Coord C1 exon
chr8:107853995-107854187
Coord A exon
chr8:107853910-107853994
Coord C2 exon
chr8:107853747-107853909
Length
85 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCCTTCTTTCCCTGTCTAGACA
3' ss Score
10.09
Exon sequences
Seq C1 exon
GTTCCATGCCTTCCTGCTCTACCTGGGCTACACCCCACAGGCAGCAAGGGATGTACGCATCATGCAGTTCTGCCACACACTGAGAGAGTTTGCCCTTGAGTATCGGACTTGTCGGGAACGGGTACTGCAGCAGCAGCAGAAGCGGGCTACATACCGTGAGCGCAACAAGACCCGTGGTCGCATGATTACCGAG
Seq A exon
GTGAGTGCCCACCCCCTTGCAGGGCTTGCCTGCCACCTCATGGTTCCTTCCCCTTGCTCTTAACCACCCTTCTTTCCCTGTCTAG
Seq C2 exon
ACAGAGAAGTTCTCAGGTGTGGCTGGGGAGGCCCCCAATAACCTGTCTGTCCCAGTGGCTGTGGGCAGCGGGCCAGGTCAGGGTGATACTGACAATCATGCCAGCATGAAGAGCCTGCTTACCAGCAGGCCGGAAGATGCCACACACAGCCGACGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-Fhod1:NM_177699:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.909
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCACACACTGAGAGAGT
R:
GACAGACAGGTTATTGGGGGC
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: