BtaINT0062517 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34984239-34984488:-
Coord C1 exon
chr18:34984421-34984488
Coord A exon
chr18:34984345-34984420
Coord C2 exon
chr18:34984239-34984344
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCCCCCTTGGTGCCCCCAGGAG
3' ss Score
9.28
Exon sequences
Seq C1 exon
AAAAGTTGTATGGCTCCAGTGGCCCTGAGCTCCGCCGCTCCCTCTTCTCACTAAAGCAGATCTTCCAG
Seq A exon
GTGAGGCTCAGAGGTGGGCCGGGGGTGGGCATCCAGGCTGAGCCCCACCCCACTAAACCCCCCTTGGTGCCCCCAG
Seq C2 exon
GAGGACAAGGACCTGGTGCCTGAATTCGTGCACTCTGAGGGGCTGAGTTGCCTGACCCGCGTGGGCGCCGCTGCTGACCACAACTACCAGAGCTACATCCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427:ENSBTAT00000063472:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGTATGGCTCCAGTGGC
R:
CTCGGAGGATGTAGCTCTGGT
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development