GgaINT0024807 @ galGal4
Intron Retention
Gene
ENSGALG00000002198 | FHOD1
Description
FH1/FH2 domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012792]
Coordinates
chr11:1343050-1343310:+
Coord C1 exon
chr11:1343050-1343117
Coord A exon
chr11:1343118-1343204
Coord C2 exon
chr11:1343205-1343310
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TCGCTGGGCTTCGCTCGCAGGAG
3' ss Score
7.49
Exon sequences
Seq C1 exon
AGAAGCTGTACAACTCGCAGGGCCCGGAGCTGCGGCGCTCCCTCTTCTCCCTCAAGCAGCTCTTCCAG
Seq A exon
GTAGGTGGCCCCAGGTCCGTGTCCCCATCCTGGAGATGCCCACGTCCCCAGCACCTGCGTGGGGACATCGCTGGGCTTCGCTCGCAG
Seq C2 exon
GAGGACAAGGACCTGGTGCCAGAGTTTGTGAACCTGGATGGGCTGACGTGCCTGATCAACGTGGGGGCAGAGGCGGACCAGAACTACCAGAACTACATCCTCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198:ENSGALT00000003437:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGTACAACTCGCAGGG
R:
CACGGAGGATGTAGTTCTGGT
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]