Special

GgaINT0024807 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr11:1326215-1326475:+
Coord C1 exon
chr11:1326215-1326282
Coord A exon
chr11:1326283-1326369
Coord C2 exon
chr11:1326370-1326475
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TCGCTGGGCTTCGCTCGCAGGAG
3' ss Score
7.49
Exon sequences
Seq C1 exon
AGAAGCTGTACAACTCGCAGGGCCCGGAGCTGCGGCGCTCCCTCTTCTCCCTCAAGCAGCTCTTCCAG
Seq A exon
GTAGGTGGCCCCAGGTCCGTGTCCCCATCCTGGAGATGCCCACGTCCCCAGCACCTGCGTGGGGACATCGCTGGGCTTCGCTCGCAG
Seq C2 exon
GAGGACAAGGACCTGGTGCCAGAGTTTGTGAACCTGGATGGGCTGACGTGCCTGATCAACGTGGGGGCAGAGGCGGACCAGAACTACCAGAACTACATCCTCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198:ENSGALT00000003437:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGTACAACTCGCAGGG
R:
CACGGAGGATGTAGTTCTGGT
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]