BtaINT0062547 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017982 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr11:101173853-101185225:-
Coord C1 exon
chr11:101185089-101185225
Coord A exon
chr11:101173950-101185088
Coord C2 exon
chr11:101173853-101173949
Length
11139 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CCATTTTCATCCGCTCTCAGGTG
3' ss Score
10.12
Exon sequences
Seq C1 exon
GCTCTCGGCCACGTGACTGTCTGGACGTCCTCCTGAGCGGACAGCAGGAGGACGGCGTTTACTCCGTCTTCCCCACACACGACCCCGCCGGCTTCCAGGTCTACTGCGACATGCGCACAGATGGAGGCGGCTGGACA
Seq A exon
GTGAGTCTCCCCGAGTGTGCGGCCGGCTGGGCCAGGCCCCGCCTCCTCTGGGCCCTGCAGATGGTCGGGGCAGATGCTGGGGTGACCCAGGAGGCTGTGCACGTGAGCCGGGGTGCTCTGCCTGGCCCTGCCCAGAGGCTCACCAGCCATCACAAACCTGCCCGTAATCTCACCAAAGCCTCCACAGGGCAAGTGGGGGGCATGTGCTGACACGTGGGGGCCACTTGGGAGCAGGTGTCAGATCCCCATGTCTGAGTGGAGCCGCCTTCCACTCCCTGAGCCTGCAGCCCCCGCCCCCACCCTGGACAGTGGTTCTGGAGGGGTGGGGGTTGCTGAGATTGGGTCCTGGAACTAACGGCTGCTAATGTGAGGGCGGAGGTTTTCAGTTACTCAGTAGACGGTGCGTGTGCAGGAGACACAAGGAGCAGCACAGTTGCTGTGAGCAGAGAGCCCCCCCCCCCCACCAGGGTCTCCTGGCGAGGGGCTGTCGCCATCTCCTTGCACCTCCTGATTCCTGCCCTGATGGGAATTGGGAGCAATGGAAAGGGAAGGGTGAGAGCCACAGGTGGCCCGAGACCTCCCCGGGGCCAAGAGAAGGAGGAGGTGGCGTGGCGGGGCAGAGGCCCTGGTTTGAAGACCTGGAGGTCTCCTGATCGGACAGCGGAGAAGCCCCTTCTACAGCAGGGTCGACACACAGGTCTCCCCTGGTCTGCGCCGCAAGTCCTCAACTCTGGCTTTGCAGGGGGAATGTAGCCACAAAACTAAAACGCCTGGGGGTGCGTGCTGGCATACAAGGGTGAGGGCAGGGGGGTTGGCCAAATGGAGCAGGAGGCAAGACGGGGAGGCCCGAGTGAGGCAGGTGGGCAGGGCCCAAGCAGATGCTCTCGGAGGGCAGAGCTGCCATCAGGAGCTGGTGTGAGAGCCGCTGAGAGCCCCCCGAGGACCCCAAGACAAACATTCTTCTAAATATCCCTACAAGCTCCGGAGAGAGGAGCGTTTAAATGCACTGGACTCACATCTGAGCCTAAAAGCACTTTTGTTTTCCTATCTCAGAGCATCTGAGTTATGGCCTCCACCTCTGGGACCCCCTCGGCGGGCAGAACAGCTCTGATACACCAGCCAGAGCCCAGAAATCAGAGTTAAGGGTTAGGACAGGCTTAATGAAAGACCAGGATGCCGGCCCAGACCATGCATCTTCCACTCGGGTGGAGTGGAAGCCAGTCTCCTGGGAAGTGAATCAGGGTTGGGGTTGGGAGGCGAGTAATTTCTTGGGCCTGGGCTTTGGGGGCGATTAGAGGGGAGTCGATGAGGTGCACAGGTCTGCCCAGCCCTCCCACCCAGACATCTGGATCAGCCAGCCTGGAAGAAAGGCCATTCTCAGCAGAGAAGGGCTAGCGAGGCCCACAGACGTTAATATCCATTTGGGCTTCCGTCAAAAGCAATCTTTTCCCGGATACCTCTGGGCGTCTGTCAGGATCACCTCTCTGCCGCACGGAACCTCTCGGAAACTCAATTGCTGTTTGGGAGGGAGCTGGCTGCTGCTTTGCTGGATCCGAATACCATCCATCCTCATTTAGGCTCCATGTCCAAACTGCCGGGCCTCAAGTGCCAACACTCGGGGACAGGGTGCCTGGGGCCAGACACACCAACCAGAACCTACTTCTCAGAGAGCCGGAGCTGCAAGAGGTTGGCAGGCAGCATCCCTGTTTGCCTAGGGGCACTTTACACTTTATATACTGTGGCCCTGCTGGCACTTTTCCAGCCCTCCTCCAACCCCTGGAGACCCACAGGGCAGCCTCAGAGAGGGCAAGAGGTTTGTTCAAGGTCATCCAGGTGGTGCTAGTGGTAAAGAATCTGCCTGCCAATGTAGGAGACATAAGAGATGCAGGTTCATCAATTCCTGGGTCGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAACATTTCTGCCTGGAGAATCCCACAGACAGAGGAGCCTGGCTGGCCACAGTCCACAGTGTCGCAAAGAGTCAGGCACAACTGAAGTGACTCAGCATGCACGCACCTGGCAAATAAGCAGCCCAGCCTCATGCAAGTTCGTGGAACCAACTGTCAACGGTGTCACTTGTCACTTGTCACTTTATGGCTCAACTATGGGGTGCCAACCACGGGCCAGAGGATTCCGCAGCAAGGTGCCAGCCTTGCAGGGAGCTAGACAAGTCAGCCAACCTGTATGGAGGCTGCAGGGCTAGGGGTCCAGGGAGACCCCAGAGGAGAGCCCCCTTACCCTGCCTGGGGCGGCCAGAGAGGCTCCTGGACTGGGAGGTTGGGGCACAGGGAGATGAGGTGAGAACAATGTCCAGGCAAAGGGAACACGTGCGGAGGTGGCACGGAGTGGGGCAGGGCTTGTTCTGGGACCATGGTGGCTCCGTTCTGCTGGCGTAGCCCTCGGGGGGCCGGGCACGGGGTGGGAAGCAGGCACGGCCTGGTTAGCATGGTTTTGCAGATGCTATAGGAGTCTGGCTTTCTCCCTGGGGGCACGGTGGGCTCTTGGGAGGGAGTGACCCAGAGATGTGGAGCCAAGGTGGAGAGTGTGCGAGCAGCTTAGGAGCTGGGGTTGCAGGGGCCTTGAACCCTTGCAAAGGGCGTGGGAGTCGCCATGTGGGAATGAGGTCGAGGGACAGGGGGACACAGGCCTCAAGGTGGCCTCTCTGCTCACTGGCCCTGGAGGAGCCCCAGCCCCTCTACACACTCATCATTGACCAGTGACCCAGGCCACACGGGGTCAAGCTGATCAGCCAGGCCACTGCTGACCCTGCCCCGTGCACCCCACCGACACCCGCCCCGCAAAAGGAGGAGGAAGGCAGGATGCACAGTCTGCCCCTGCTCACCTGTAACCCTGGGCAAGGGGCCCAGCTCGGTCGCTGGGTCATTTGAGAGTCCTCCCGGGTCCCCCACTCATGCTCCCTTTCTGCACCTGTCACGGGTTGTCCGTCTGTGTCCCCACCAGGCTAGAGCTCTGCAGGGGGCAGCTGGTCACCTGGTGGCCCCTGTAGCTCAGGCGTCCACATGGTGCTTCCATACCATCTGTGCTCCTAAATACTTGCCGGATGGGTAACCATTGGCATTTTCTGGCAGCATAACTTCCCCTCTTGGAACCTCACTTTTCTCATCTGTTAAATGGGAATAAAGTAGTGCTCTTCATGGTGGGGGGGCCATCAGAATCCCCCACAGGCTGCTCACTTGTGGGGCAGGGGCAGAGGAAGAGGGAGGGGCACCAAGGGTCCTTGCTGAGCCTAGGGATTCCCTGAGAACAGAAGAACTGGCTCTACCCTGTAGGATCTTATAGTCAAAGTGTCTTTCATTATTTTTTACCATTTTGGCTGCACCCCACAGCACGTGGGATCTTAGTTGCCTGACCAGGGATCGAACCCACGCCCCCTACATTGGAAGGCAGAGTCGTCACTGCTGTACCACTGGGGGAATCCCAAGCGGTGTTTTTAAAGAGGAGGAAGATGTGTTAAAAACAGAAGCCAAATTTCCTCATTTGGAAGGGCGATTCGTGGGATGAAGCAGCCGTTTCCAGCTCATCCCCGGGGCCCTGAGAGACTGGAAAGGTCACATTCCCTCTGGGGCGTCCCCTTCCTCATCTGGCCAGTGGGGTGGCCCTTGTGTTTTACGTGGCCACCTTTCAGGGCTGGGGAACAGGGTGACCAGGCCCAGGGCCCGGTTCGGGTTTTGTGGTTGGAGGGAGGGTCCAGCCAGCGTCTGCAGGCTGGATCCCCCACTGTCCTGCCCTTCGGCCCCGGGGACACAGCCTTGTCCCCACCAGGGTTGCTTCAGCAGAGCTGCCAGCCGGCGTGATTGCCAAGCCCTCATCTTTGCATAATCACCAGTCGAGGTCAAGAAATCAGGTCCAGTTCAGCGTCTCCTACCGCGGGGACCTGCAACAGGACTGACTCTGCTCTGCGCCCCCCGCTCAGATCCACGGTGCCGCCAGCTTTCCCCCGGCCCCACCAGCCGAGTGCCCGAGCCTGCGTTCTCTGCCAGGCATTTTTACTGCCGTGCAGGGTCAGCTGGCTCAGACGGGCCTCTAATTGGCTCCACTGCGAGAGCAAACCTCCCCTCCTACCGTGTCCATTCCCTCCCTACCTGTGCTCCCCAGGCTGAGGAAAATCCTTCTCTTACTGGGAAGACATCAAAGGAGCTGAACCCCTGAACAGAGCCCAGCCCAGCAGGGGATCAGGCTCAGGAGAGATGAAAGCTCCCAGCCTCAGCCAGGATGCCAGGATGCAGGTGATGGGGGGGTGTTGCTGTGGGACACACTAGGGGCGCTGCCTAGCAGGACCTGGGGGTCCGCCAGGGTGCGGTCTCCTCCTTGTGTCCCAGGGGCTGCGGAGGCAGGAGGAGACCTGCCGTGACGTCAGTGGCTGTCGCCCGGCTCCCCAGTGTTCCGGGGGAGTCCTCCAAGCGCACGCTAGTAATGACCACGTCCACTGCTGACGGCACCCCTCTGGTCCATGAGTGATCCGCTGGGAGCGTTTAGGATTTTTCAAACTTTGAACGTAGACGAGGTGGGGGGGTACACGTGGAGCTCAGCCCGGCACCTCAGCATCTGATAAATGGCAGCTCTGAGCGCTGTTTGCCTGGAGCCGACAGCCACCGCCTGCCAAGCCTGGGAAACATGGCGGGGCGCCAGGCCCAGGGGTACCATTTGCAGTCACAGACAAGGAGTGGGCCCACTTCCTTCTGGGTTTTGGTGGCTGGTTCTGAAGAAGAGGGAGGTTAGACATACCGTGCCTCTCCCCGACCCCACCGGGCTCACACCTACCTTTTCCTGCATGGCATCTTCACTGTGACCCTGCAAGGCTGACAAAGGGGTTGCTGATGGGGCCTTTGAAAATATATATATTTATTTATTTGTCTGCCCAGGTCTTAGTTGTGGCCTGCGGGATCTTGAGTCGTGCCGTGAGGGATCTAGTTCCCTAACCAGGGATCAAACCCAGGCCCCTGCGTGGGGAGCTCGGGGTCTTAGCCACTGGACCCCCAGGGAAGTCCCTGTTGGAACCTTCTTTTTTTTTTTTACAGAGAGGGGAACTAAGGCTCAGAAAGGGTCCTGTGACTTGTCTGAGGTCACACAACCCATGAGAGGCACAGCCAGGATTTGAACTCAGTTCAGCCTTATTCCAGCAATAGTGCTCTTGCTAGCAAGCCCAGGCTCTGGGAGCTGCTGCCCAGAGGTGTCCAGAAAGGACTGGAGGAGCAGCTGCCTCCTGGGAAAGCCGGCAGAGCATCCCCAGGGGCCTGCTTTGAAGGGCTGCGTTTGTTCCACGTCTAAGTTCTTTGTTCTTTAGAGACAAGAATCCGCCTCTGCCATCGCCTGCCACCCCTCCTCCCGGCACCGCCTGCTCAGGAGGCCTGGGAAGGCTGGTGGAGCACAACCAACACAGTTCTGCCTGTAATTGGTTTCCGCAGCAACTTCATCAGAGTTGAGGAAAAATCTCAGATGCTGCCTCCTGGGGACCCTTCAATGGCGGCAGAGACCGCCCCCCCCACCACCTCATAGTGTTTGGACCCACCCCGTGCCTGTCTCTTGCGCCTCAGCTCCTCTGACCACCTGCCAAGACCCTGCTCAATCTGCAGTTCACCCAAACGTCTCCTCCTCCGAGAAGCCCTCTAGGACCCCACCCTCCCAACCATCCCAACAGGTGGCTCATCCTCCTCTGAGCTCCGGACAAATGTAACAAGTGTGACCCTTACAGACTCTTATCAACCAGCCCATTTAACCACGTCACCCGTATGCTGCTGAGTTGGAGCTGTTACAATTCCCGTTTTACAGATGAGAAAACTGAGGCACGAAGATCAGAAGAACACCTCAGATTGGGAGCTGCTCTGCCCTGAGGCTGCTGGTTTGTGCATCCCTCTCTTCTGGGGCTGTGAGCTCTCTGAGAGTCAGAGTCCCTCCACCAGTCCAGGCACACCACACGGGGTCTGCAGCAGCAACCCTATCATTTTGCGGAAGAGAGAAACCAAGACTCAGATGGTCGCATGGCCCTCGGCTGGAGCCTGGCTAGAACTTGGATCTCCTGGGTGCCAGCCCAGTGCGTTTCCTGGGACCCGCTCAGCTCAGCTATGATGAGGAGGGATGGGGGGCTCACAGGCCTGGGGGGCAACGTCCACCCCCTTAGCCATGGGGCCCCCCTGGGCCACCCTCAGCTTTGTGTACTGTCAGTCTCCCTACTTCAGGTTTCAGTGGGCCCCTGCCCTGAAGCACTCCTACTCTGCAGAGGTGGCCCCACCTCTCCAAACCTTAGTCTTCTCATCTGTCAAATGGGAGCATGAACCCCTCCCTCCTGGGCTGTGGTGGGGAGGACTGAGATCATCCTTGAAGGCACTGGGGTGACCAAAGAGCCAGACCCTGACTCTCAGGAGGTCTCCGCACTCTGGGCGGCGTGGCTAACGAGATCAGCCGGGGCCTATCGGAGGAAGAGGCCCAGAGGACACTGAACCTGTGGAGCGCGAGACAGGCCCCAGGAGCCTGTCTGACAAACAGGGGACAGTCGGCCGCTCTGCTCCTCCCCCCACCCCCTCCTGCCGCCCAAATGCAGCGGCTCCTTCCTTTGAAACCTCCGGGCACCATCTGCAGGACCATGTGGGCCCAGCGCTCCCTTGGCAGAGCCTCCCTGAGCGGCACTTGGAAGATGCCGGGCGGCAGGCGGCTGGCTTCTGAGAATCCGTACCAGAAAAACGCACCCGTCTGTCTTCCCACTCGTGGCATCTGCCCAAGAGGCCGCAGAAGCGTTTCTCCATCAATCACTTTGCAGCCAGAACCCGAGGGAGAGGCCCCAAGAGTTGGGCCAGTGGATATTTTAGCCCTAAAATTAATCGTTTGTTTCCCCACTTTTCCCCCACCTTTTGTGCCTAAATGGAGACTCCTGTTCCATGGCTGGGACAGAGGAGGGGGAGGTGGACGCCTCAATCCTTTACCTGCCTCTCCCCTTTTTTTCATTTAGCTGTACCAGGTCTTACTTGAAGCACGTGGGACCTTTTAGTTGTAGCATGGGGGATTTAGTTCCCTGACCAGGAATCGAACCCGGGCCCGCAGCATTGGGAATGCCGAGTCTTAGCCACTGGACCACCAGGGAAGTTCCAAGAGGTCTTTTTATTTTTTTTCCCCCTGCTACACTGAGCAGCCTGTGGGAATCTTAGTTCCCCGACCAGGGATTGAACCCAGGCCTTTGGCAGTGAAAGCATGGAGTCTTAACCACTAGACCACCAGGGAAGTCCCTTGCTTTCTTCTTTGTATCTTCTTGTCTGGCTGATCCTTGCTCTGTAATTGAAGGCCTTCTAGTGGGTGACATCTGGCCCTCCAGGGTCCCCAAAGCCCAGCTGGTTTCCAAAAACCTGAAGCCACAACTGCAGTTCACCCTGAACCCCGAGTTAGAGAAAACACTCCTGGGAGCCTAGGAGGACCTGCGGATGACCTGTGGCCTGTGCCGACCTGGAACGCATGGCATGCCGTGGTCAGCTCAAGGGCAAGACCAGGGCTTCCGAGTCTGAGATCCCAGCCATTGCCCAGCATGCTCGGTCACCCAGAGTTGGAGCTATAGGATCAAGACAGCCCATGGCAAAGGCCGACAACTTCAAACTGCAGGTCGTGATCCATTGGCTGGTGGAAAAATCAATTTAATGGGTTGTGAGCAACATGGGTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTAATGAAATGGAGTGGAATAGAACAGAAGAACAGGGTGGAAAATATTAACACCCCTCCATCTGAAGGACAAGTATCGTTTCGGGAAGCTTTTGTTTCAGATACAAAGAGCTGTGAATATGTGTGTCAGGATGTCAACTACATTTCCCTGGGTCACGGTCCAAGAGTCTAAAAGCCACTTCTTTGGAACTGCGCCACAGCTGTGTCTCGGCCCTGGAAGGGGTCGGTCATGGTTTGTTACCACTCGGAAGAGCGCCCGTGTTGGCAAACGATGCTCTGACCTCTGAGCTGCGGCGGACTGTCAAGACATCTGCTGCTGTCAGTGACGGCAGGTGCTTCCCAGGTGGAGGAGAGCAGCCGGGAGGCCCCGTGGTCTGGAACGTGTGCTCACCACCTCTGATCATTCCCAGACCGAGCCCCAGCCGGGGCCATGCCTGCCACCGGCCTCCAACCTGGAAAGGGAGCGGGAAAGCGGGGCTGAAGGTGGGAGGATGCTGAGAGATCAGCTCTTGGCCTGAGAGGCCTCGCAAGGAGACAAGGGGGCAGGTTTGGGACGCCCCTGGTGGGTAGCAAGTGAGCATGTGGATGTGGGTGGTGAGACGCGGATTTCCGGGTGTCCAGCATGGCCTCAGGCTACGGAGTGAGGGGTGAGTCAGACTGTCCACCCATAGCTGCCTGACTTCTGGCCAGTGTCCGAGCTTCTATCTCCTGGAATGGAAAGTGGGGCGGGTCAGGGGACCCAGAACCGGGCTCCTGGGGTAGGGGTAAGGAAGTGCGTGCACCGGACAAGGAGAACTTAGCCTGAGCGTCGGCTGTGGTCAGCTCTCAACCCAAGCCGGTCTGTCTGTCCCAGCGGCTAGGGTTCATGTTCTGCCTATGCCTGCAAGCGTGACACCCCCACTTTCCACTTCATAATAGCGGGAACAGGAAAAACAACAGTGATGGCAATAATGATACCAACTACTCTGTGATTTATTCCTCGCTGAGGTCCGGGGGGTGAGCTGAGGGTGGGCGAGGCAAGCGTGGCCCCGGGGGCAGGAATGATGTTCCTGGGCCACACATTGGGACATGCGGGGGCCAGGATGGGCCCTTGCTCCAGGGTCACCCTGGATCTCCTCCCAGAAGCCAGCCCCTCTGGCCATCCACTATTCCTCTGATCTGCCCTGCTTCCAGCCTGGGCGGGAATCCCCTCAACTAGGCCTCACTCTGTGTTTCCCTGCCCCAAGGGCCCTGACTTGGATTTCCCAGCTGGTGCCTGACATGGATGTGCTCAGTGGGACATTTGGGGGAATAGACTTGGGACAGGCCCCTGGGACAGTTCTGGAGGAGACACGCCCAAGTCTGGGAGGAATATGGCCTGGGGCGGGGGCCGGGAGAGAAGGGAGGAGGGGAGGCCCTGGTGGCCCATGTCCTGGGGCTGTGGGTCTCCTTGGCTGGTATGGGCTGACCACCGCCCATGTGCCAGGCCCTGAGCGGACTGTCTGTGGGTGAAAGTGTTACTTCCTCAGTCCTGTGCGACTCCTTGCAACCCCTTGGTCTGTCCATGGAATTCTCCAGGCAAGAATACTGGAGTGGTTGCCATTCCCTTCTCCAGGGGATCTTCCCCATCCAGGGACTGAACCCAGGTCTCCTGCATTGCAGGCAGTTTTTGTTTTTGTTTTTTAACAATCTGAGCTATCTACAGCCAGTGGTCACGGGGGTTTGATGCTGAGATCCCCATTTTACAGATGAGGAAACAGGCTCAGCGAGGCAGCGTCACTGGCTGGCACTCTAAGTGGCAGAACCCGAGCTGTAGAGCCCAGATTGGGAACCACTGTTCTCCCCGCCCCGCCCCTTTCCTCGGCCCCTGCAGCCCTCCCCCCACCCCACCCCCAGCCCGGCTCTTCTTGTAGAAACAGGCTCTGCTGTCCAGGCCTTCTCGGGGGAGTGTCTGAGCTTCTGCCAGGATTAGGCCTTTCAAAGGGCGCGTGCTCAGGGTCCCAATCCGCAGCCATCAATACCCGCTCTCCACCGGCTCTCTGATCTCCGAGCCTGATCGAATTTCCTTCTGCTCGCGTCCCTTCTGAGGGCTTTCACGTGTCAGGGCCAGGCCGGGCTGAAGGTAGCGAAGCAAAGGAAAAAGGTGTCGCCGCCTCCCTCCCCTCCCGCCACCTGACGTCAGAGCTGCCCAAGCAGCCGCGGTGATGGACGGTGCCCTGCGGACAGACCTGCAGTTGCGGGCAGACGCCGCACAGGGCGGTTCCAGGCGGCTGAAGCCCGGCTGCTTAGTAATGGATCGGGTGGCTCTGTGCCGCGGCCAAACCTCTAACACCTCAGACGCGGGCGCAGATGGAGGCGGTGGGGGCGAGTGCTGCCTCTGCAAATGAGCAAGAAAAAGGCTTGTTAGACAGAAAGGCTTGGGGGCGGAGGGGGGGCGGGGGGCTGCGAGCTGGGGAACAGGATTGTCAGCGGATCCTGTAAATACTCAAGGCAGCTCTGGCCTGGACCAGCGTGCTACTTATTTCAAAGCAATTTAACCGATGGGATTCCGGACTCCCAAATCAAGAATGTTATTAAAATGAAGAACAGAAGCGGCCCGGAGGCTGGCTGCGGACTTCTGGTGCTCCCCTGAGAGGTGGCCGGGGCTCAGCTTTCCCAGGGCCCCCTGCCGGTCCCCTACCAGGGGCTTTTTAATAGAGTTGGTGGGGATGTACATGAATGCAGCAAGGGCGCATTGAGAGACCCAGCCAAGCCCGGGTGTGTGTCTCTGTGTGTGTTACGTGAAGTGTCAGTCGCTCAGTCGTGTCCGATTCTGCAACCCCATAGACTGTAGCCCGTCAGGCTCCTCTGTCCATGGGATTCTCGGGGCAAGAATACTGGAGTGGGCTGCTGTGCCCTCCTCTGGGGAATCTTCCCGACCCCGGGATCGGACCCAGGTCTCCTGCATTGCAAGCAGATGCTTTGTCATCTGAGCCACCAGGGACACCCTGTGTGTGTGTGTTATTGGGCTTTAAAAACTCAAGAATGGGCTTTTGTTCAGTGTTGTTTTGACCCAGGAAAAGGTACAGAGACCCTTGTTCACCCGCTTATTATTTGACCAGTGGGTAAACTGAGGTCCCCGCAGGGATGGGACCAGTCCAGGGTCACACAGCAAGGCAGCAGAGTGGGTCTAGAAGTCTGGCTTTCTCCACTGCACCCCAGTCCACCCCAGTTCCTCCTCGAGGGGGCATTTGAGGGCCTGGGGGCATTTGGTCAGTCCCCCCGCCTTGGAATACCATGAGCCTCCCAGGTCCAGGTCCCAGCGAGAGCTGTTGAGAGACTTGAGGCTCAGCCCCTGTGCTCCCCAAGTGGGCAGGTGAGGTGCAGTGGGGGGCCAGGGGACGCATGTGAGGTCCTGGGAAGGCTGGGACCAGCTCTCCATTTTCATCCGCTCTCAG
Seq C2 exon
GTGTTTCAGCGACGGGAGGACGGCTCCGTGAACTTCTTCCGAGGCTGGGAGGCATACCGTGATGGCTTCGGCAAGCTCACGGGGGAGCACTGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017982:ENSBTAT00000023924:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(19.8=93.5)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development