GgaINT0124054 @ galGal4
Intron Retention
Gene
ENSGALG00000003866 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr17:6045336-6048710:-
Coord C1 exon
chr17:6048574-6048710
Coord A exon
chr17:6045433-6048573
Coord C2 exon
chr17:6045336-6045432
Length
3141 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CTTCCCCTGTGTCTTCCCAGGTA
3' ss Score
12.24
Exon sequences
Seq C1 exon
GCTCCCGGCCCCGGGACTGCTTTGACATCTATGCGAGCGGACAGCAAGAGGATGGGATTTACTCCATCTTCCCCACACATTACCCCTCAGGCTTCCAGGTCTACTGTGACATGACGACCGATGGGGGCGGCTGGACG
Seq A exon
GTGAGCGATGTCCCCAGGCCGGGATATGGGGGCTGTGGGTGGGAGATGTCACTCGGATGTGTCATGGGGACGGGGCCTGGCTGCAAGCAGGGACCTGGCGAGGGTTCAGCAGGCTGGAGCTTGGGGTTGGGCTGTTGGGTGCTGCTGGGATTGGGCTGTTGGGTGGTGCCATGGTTGGAGCTCGTATTTCATGGCAATGGGGACATAGGGACCCCTACACCACAGAGCCAGGTGCTGGCCTGGGGGTCACTGACACCCCCTGCCCTCCATCACATCCAGCATGGCCCAGCCCCAACACACAAGGTACCATTGGGCAGTGACCACCTCTTTCCTCCCCTTTTTTTTTGGAAGCACAAAGGAAAGCTCTGTGCCCTCCCGTAGCATCACCCACCCCAGCTCATTTGTGCACCACTAACGAAGGGGCGCCCGGGGGCACCTCTGCTGCAGCACTGATTAACTCGCCCTGTCCGATTCGCTTTGTGCCACGGCTGCGACAGCCCCATAATCACAGTAATGCAGCAGTGGGCGACAGGGGGACGCGGCCACCCCCCACCCTCTGGGTTCCATTGGGTGCCCCCAGCCTGGGGGATGTGTAGCACGAAGCAGGGACCCCAGGGTGGCGAGCAGGGGTGACAGGCGGCCTCTCCATGAGGACATGGCCCAGCACCCCTCCAGCTGGGCGCTCTAGGAAATAAATCCCCGTGATCTGCTTCCCTTAAGTAGCTTTGAGTGGTGCCAGGAGGCAGCTTAGTCTCCCCCCCCCACCCCCCACCCCATTGCCTTCCAGGGGCTGATGAGCCTTCAGCCTCGCTCCACACAGAGCCCACCCAAGCAGACCTGTATATTGGGTTCACATTGGGGAAACTGAGGCACAGCACAGCAACCCCACATCCTGGGGGTCAGAGAGGGCAAAGAGGGGACGCTACAGTTCCCAGGGCATAGAGGGTCCTTGCAAATCCCATGCACAGCCTCCCCCTGCCACACACTCAAGAGCTGCCTGAAGAGCAGCCCAAGGTGATTAGCCAGACACTCAGAGGTTTATTTAAAGCTGCTGCAGCTGGGAAGGCTCCAGCGGGGCCAGGAGGGTGCAAAGGAAGCGATTGCACATCGTGAGCCCCAGCCTTAATGGGGGACAAAGGACCAAAGCCTGTGCCGCATCCCAGCACTGTGGGTCAGAGCATCCGGAGCTCTCCCGTCCCCCTGCCCCATGGCACGGCCCAGCCCGGCTCCCACACGTCCCCATGGGCTGTGGGGGGCTCACCCATCCGTAGTGCTGGGGCACGTCGGGGCCCGCGGGCTCCAGGTAAGGCTGCTGTGGTACAGAGCCTGGGAAATTTCCCTCCCCTCCTCCTCTGGAGCTGTACTCCTGACATTTGGGCTTATTTGCATGTGGGTAGGTGGGTGGAAGCAGCTGAATCCATTTGGGTTCGGGAGCTGCTGAGCTAAGCCTTCAGCTGCAAGAGCTGTGGCAGGGGAAGATGGGGCGCCCGGCACGTCCCCAGCTGCGGGGACACCCATCCCCAGCCACGTGCCGAGCTCTCTGCCCCCCATCACACGGGAGCATCTGCACCGCCTCTGCACTGCCGTTAATTGCAGCTCGCCCGGGGCTGACCGCCTCGCAGCACGGGGCAGCACGCTGATATTTCCCCTCCCCCCCCCCGACCCTCCGCTCCTGGCGCTTTATTAAAGCAATAACGGTGTGACGGAGGGCAGCAGCACGGCCTTCCCATCGCCTGAGGACGCCGCTTCGTGCGCCGGGCTCTTTGCAAACGCTCTGCGCTGTTCCATCACCGCCAGGACGCGCCTCAGCATCTCCGCCCCGCGAGCGGCGGCGCTCTCCTCGCGGTGCCCGTGGGGACGCTGACCCCAAAGGAAGGCGGCACTCCTCCTTTTTTTTCTTGATTTTGCCCTCTTTCCCGGGTTCTGTGCCTTCCCAGCGCCTGCCCCGCTCTGCCGAGCAGCCAGGCGGGCAGCGAGCCGGGGCGATGAATATTTCAGCCTAAGCTTTAAAGCGGGGAAGGAAATCCTTTTTGCTTAAGAGGGGGCGATGCATATTTCATGAGGAGGGAAGGAAGGCAGCCCGTGCTGTGAGCACAGCCGGCCCCCCTCCCCAGCTGCCCTCACCTGCAGTCCCGGCCCCACGTCCCTTTGCGCGCCCCTCTGCAGACCCCCAGAGCCCGCTCACCAAAACCCGTCACTTCCCCGTCCCGCATGGGATGCACAGGGAGGGACCGCACACAAACTCGGGCTGCGGCTTTCCCAGCGCGCGGTGCGAGGTGCTGTGGGTCTCCTGCAGCCAAATGTGGGGACGGTGGGGCACGCGGGGTCCCCGCAGTGCCCGTCCCAGCCCTGAGCTGCCGACAGCTCCGTCATCACCGCGCCGCGCCGGGGCTCAGCTAATGAAGATGTGTCCCGTGCGCTTTCCCGAGCAATTGGCCTATTTACAACCTCGGGTCAAAGCCGATTAAATGAGAGCATCGGCATCACCGCTGCTGCCTTCCCTGCGCGGCGCGGCGTGGGGAGATCAGCTCGGGGCTCCCAGCCAGCCCCGCCGCCCCCTCACCCACCGAAAGCCCCTTTAAATGGGCTTAGCAGCAGCTTCTCAAGCGCTCGGTGCAGGGATTAAAATTAAGGCTCTAATTCTAGAAGGTAAGTACAGCAGGATCGGCGCTGGACCCGCGCCCAGCCCCATCACACCCGGCCCCAGAGCAGCCGGGCGCTGAGCGTCCCATGGGCGGGCAGCGGGTGCTGCGGGGGCAAAAAACACGTGTGGGTGGCTCCAAGGGCAGGGGCAGCCCGGGGAGGTGGCACAGCACGCAGCACTGCCTCTCTGCCGGCTCTGAGCATCGCAGCCGTGGGAGCGCAGCGCTCCGAGGCCATCTCGCCGGCTCCGCTCCCCTCCAGGCAGGCTGGAGCGGCCAAGTTTAATGCAATTAATCCAGGGCTGGAAGCTTAATTACGTTCGAATGGTCAGGCGGGGAGCAGCGTTTTCTGGATCGCTGTCAATAAATCAAACTCAAAACTAAAGATAAAAGAGGACAAAACACACAGGGCACGAGATGCTGATGAACGGAGAGGGGGGAAGGGAAGAACTGCTGGGCTGAGCCCGGAGCTGCCCTGCCTTCCCCTGTGTCTTCCCAG
Seq C2 exon
GTATTCCAGCGACGGGAGGACGGCTCTGTGAACTTCTTCCGTGGCTGGGAAGCGTACCGGGATGGCTTTGGGAAGCTGACAGGAGAGCACTGGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003866:ENSGALT00000006154:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(19.7=93.5)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]