BtaINT0062548 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017982 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr11:101170466-101173949:-
Coord C1 exon
chr11:101173853-101173949
Coord A exon
chr11:101170646-101173852
Coord C2 exon
chr11:101170466-101170645
Length
3207 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
CATTCTCTCCTGTATTTCAGGGC
3' ss Score
11.06
Exon sequences
Seq C1 exon
GTGTTTCAGCGACGGGAGGACGGCTCCGTGAACTTCTTCCGAGGCTGGGAGGCATACCGTGATGGCTTCGGCAAGCTCACGGGGGAGCACTGGCTAG
Seq A exon
GTGAGACCCCTGCCTGAAGCCTGGCCCACCCTCTCCCTGTGCAATGCACGCTGTCAGGCATGAGCCCCCTCCTCACATGGATGCCAGCCAGGTCTCCATGACCTCCTCACGCCCAGGTCAGCTCCCAGGTTCTGCATGGAAAGGGGACCTGAGCGTCCAGTGGAATGTGCTCTAGGAGCAGGAAGCCCAGGGCAGTGCGCTCGCCGTGGGTGGGTCCCGCGAGGATGTGTGCTTGTCCCGCTGGGGGCACCCTGGGACCTGGTTTCTGTCCCAGCTCAGGCCTCTGTGGCCGATGCAGGTGCTGGAAGACCAGGACAACCCTCACGCTCCCCTTGAGGGTCAGCACCCACCTCCCCAGAGCAGCACTGGTGCCCCTGCCACTCCTGGCATCTTAACTGAAGTCTGTCAGCAGCCACTGAGTGCAGGAAAAGCATCTAAGTGGAGCCTTGGCCAGCTCCTGGCAGGCAGGGAGCCCCGATGAGAATGTCGGCGGGAGCCCAGTCCTCAGCTGCCCTGTGATGTGCCCTGCCTCTGCTTTTCCACATTCCCCTGCCACCTTTTCATCCAGTGTTTTCTCTTTTCCTATTGAGTTATGAGAGCTCTTTATATATTAAGGTTATTGATTCTTTGTCAGATACCCCTGATACATAGTTACTCCCAGTCATTTGTCATTCAGCCTCTCTATTTTTGGTAACATTATTACTTATTTCCTAGGAGTTTTAACTTTTTTTTTTTTTATGTAGTTGATTGTGCTAGTCTTTTCCTTCATATCTTCTGAGTTTTAGGCCCTGTTTTTCTCTCTCAGTGTCATAAAAATGTCTATTTTTAAAATGCCTTTTCAGTTTTCGATGGTAGGTTCAGCTCTTTAATCCACCTGGGAGTTCACTGGGGTGACAATGGGGGTCTAAGTATGTTTCTGCATCTTCCTCCTCACGCGCTGTGATCTGAACTCTGATGGATGGTGGGGATGGAACTCCAGTCACCCAAGGGGCCCAGGGAAGTGGGGGGTTGTGAGCATCTTGGCAGATCAACAAGGACTGGAGAAACCCAGAGAGTAAAGATGAGGGAGGTGGAGGCAGGGGGAAGGGGGCCTTGAGGGGAGGAAGGGTAGAGAGGAGGGAGACCCCAGCCCCTCCTTCAGGACACCTGCCCCGGGGCCCCCGTAGGCACTGGGCTGGCCCATTAAGGAGTGGAACTCTGCTTATCCCGGCAGAGTGCTGTCCAAATGGGGGTCCATGGGGCCCACTCGGGGGTGGGGAAAGGAATCTTCCAGCATCCCCTGGGGCTGGGCTCCCTCTTGCCCTATACCTGGATCAGATCATCTGTCCTGGGCAAGAACTAAATGAGTTCATGGAGTCTGGGCGAGCCTGCCTGGGTTGAGCTCTGCCACTTAGCAGCTGTGTGACGTGGGCCAGTGACTTCACCTCTTAGTGCCTCATTCTCACCTATGCAACATGGATAATACTAGCAGCCATCTACTGGATCACGACAGCAGTGGCAAACACCTGGATCATGTGTGCAGTGGGCCAGGCGCTGTTCTAAGAGCTGTACAGGGACCCTTTAATTAAATCGGACTCACTCGAATCCCCCCGGCTTCATTAATCCACGTGAAGCGCTCATAGCAGCGCCTGGCATTTGTAAGTGCTGTCTGGGGGGTGGGGGCTTCTGTCGGCGGTGCCTATGGTCTGCCCTTTGCAGCTTGGGAGGCCTCTGGCCCTCACTCCACAGGCGTGCAGCCTGGGGCCCAGAGAGGGCCAGCAGCTGCTATGAGGCTCTAGCCCAGGGAGACGAGGCCCCTGGGCTCTGGCATCCGGGTCCTCAGTGGATGCAGGGAGGTTCTGGCTGTCTGGACGGCTTTTGCTCTCGTCATGGTTCCTTTTTCTCTGCCCTGGACCTGGACCGGAGTCTTCCCTCTGGGCTGGTTGGGGAGGAGCCCACACAGCCCTCCCGCCCTGGGGGCATGCACACACTGACCCACGCAGGAAAGGAAGGCAGGAGGGACAGGCTGATGAAATGTCACTTGGTGCCGATAACTTGTAAGGCGTTTAATTAAAAGCCCTCTTAATCAAGAGGTAATCAAACTGGCAGGGAAGCACCTTGAGTGTGAGTGGCAGGAGTGGGGTGGAAGGGGAAGGGGAGGGCCTGGCATGAGACCCTAGGGTGGGCACAGGAGAGCGCAAGAGGGGAGGGACAGTGGAGGTGGGGGAGGAAGTAGGACAGGGTATGCTGAGGGGTGTCCAGAGCCAGGCATGGTCTTCTGCCTCTCGTCCACTAGGCCAGCATTTATTGAGCACCTATTGTGAGCTGGCCCACCTCAGATGCTGGGGTTCCACAGTGAGCGGGACAGTCATGTTGATCGCATGGAGCTTCCACACTGGTGGAGTGGGGGAGCCCGACATGGAAATAGGCAGCTGGGACCAGAATGATAAACACCAACAGGGGGCACCTGGGTTGGCAGAGGTCCTCCACCTCGACAGGAAGTCAGGCAGTCTTCCTGAGGAAGTGAGATCTGAAAATGAACAGAAAATAACCAGGTGACGGGGCTTCCTTGGTGGCTCAGCAGTAAAGAATCCACCTGCCAATGCAGGAGATGTGGGTTCTGTCCTTGGGTCAGGAAGATCTCCTGCAGAAGAAAATGGCAACCCACCCCAGTATTCTTGCCTGGGAAACCCCATAGACAGAGCAGCCTAGTGGGCTACAGTCCATGGGGTTGCCAAGAGTTGGACAGAACTGAGCGACTAAAGAACATCAAAGCAGGTGACGAGAGTTGGGAAAAGTGTCTCAGGCAGAGGGAACAGCATGTTCAAAGGCTGTCAGGCCAGGGAGTGCATTTGAGGACCAGATCCCATATGGCCAGAGCCCAGAGTGTCAGAGAAGATAAAGGCACCATCACCCCTAACCCAGAAGGTTTTCCAGACTCCTCTTGACTCCTGCAGCCTTTCTACCAGCCTTCAGCTTAAAACATTTGGGAAGCACAGCCTGATTTAAAGCAAACACAAAATATGAAAAACCGTCAGTCCTGTTTCCTGCCAAACACAGCTCTGCAGGAAGAAGGAAGTAGCCCAGGGCTGAAAGTACACCCTTGGTGGTGGTTGTTCCTTTCTGTCACCAGCCACATCAGCTTAGCTCTCATCTCCCCTTGGTTCTTTACAGGGAGGTCACTTCCTCAGCCCCCAACTTCTCTCATCATTCTCTCCTGTATTTCAG
Seq C2 exon
GGCTCAAGAGGATCCATGCTCTGACCACTCAGGCAGCCTACGAGCTACATGTGGACCTAGAGGACTTTGACAATGGCACAGCCTATGCCCACTATGGGAGCTTTGGTGTGGGGCTCTTCTCTGTGGACCCTGAGGAAGATGGATACCCGCTCACCGTGGCCGACTACTCGGGCACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017982:ENSBTAT00000023924:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.7=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development