GgaINT0124055 @ galGal4
Intron Retention
Gene
ENSGALG00000003866 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr17:6044751-6045432:-
Coord C1 exon
chr17:6045336-6045432
Coord A exon
chr17:6044931-6045335
Coord C2 exon
chr17:6044751-6044930
Length
405 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCGT
5' ss Score
6.6
3' ss Seq
GCTCACCCCACTCCGTGTAGGGC
3' ss Score
5.76
Exon sequences
Seq C1 exon
GTATTCCAGCGACGGGAGGACGGCTCTGTGAACTTCTTCCGTGGCTGGGAAGCGTACCGGGATGGCTTTGGGAAGCTGACAGGAGAGCACTGGTTAG
Seq A exon
GTGCGTGTGGGGTGTTCTTTTGCAAATGATTGAATCCGTGCACTCCAATGGGCAAACCAATGCAGCCAATGGCTGAGCCAGCACACACAGATAGCCAAATCAATGCACCCGGATGGCCGAACCAATGCACTGGCCGAAACCAATGCACCCGATGGCCAAAACTGTGCACCCAGTGACTGAACCAATGCACCCCAATGGCTGAGCCAGTACACGTGTCCTGCATGCCATAGCCAGGCAGCCACGGGGAGCGCAGGGCAACTGCAAACTCATTGGTAGGCGGGCGAGCGGTGCTGCCGTTTGCCCATGGGCTGCACACATGTCCTTGGGCAGGGCAGCGGGGGCTGGAAGTGGGGATCAGTGCATCCCAGGGACCCCCCTCTGCCCTGCTCACCCCACTCCGTGTAG
Seq C2 exon
GGCTGAAGCGGATCCACGTGCTGACGGTGCAGGGCAGCTACGAGCTGCGCGTTGACCTGGAGGACTTCGACAACGGCACCGCCTTCGCACATTACGGCAGCTTTGGTGTGGGGCTCTTCTCTGTTGACCCCGAGGAGGATGGGTACCCCATCTCCATCTCTGACTACTCAGGGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003866:ENSGALT00000006154:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.7=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCAGCGACGGGAGGAC
R:
CTGCTGTCCCTGAGTAGTCA
Band lengths:
276-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]