MmuINT0064514 @ mm9
Intron Retention
Gene
ENSMUSG00000026841 | Fibcd1
Description
fibrinogen C domain containing 1 [Source:MGI Symbol;Acc:MGI:2138953]
Coordinates
chr2:31672644-31677088:-
Coord C1 exon
chr2:31676992-31677088
Coord A exon
chr2:31672824-31676991
Coord C2 exon
chr2:31672644-31672823
Length
4168 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CTCCCCTCCCCCACCCTCAGGGC
3' ss Score
10.95
Exon sequences
Seq C1 exon
GTATTTCAGCGCCGGGAAGATGGCTCTGTGAACTTTTTCCGAGGTTGGGAGGCGTACCGGGAGGGCTTCGGCAAGCTCACAGGAGAGCACTGGCTGG
Seq A exon
GTAAGCTGCTGCATTCTGGGGACTCCATCCTCTGCCGGGCCCTTGCCTGTCCTTAACTGGATTCCACTCTAGTCTCTGAGGCCATTCGCTGGTATGTGGGAGTAACTACCGGTTCAAGTGATCGAGAGCTTGAGAATAGAACCAACAGGAGACCATTATGTGTGGTCCTGTGGACATGCAGTGTTCAGTGTGACAAGGAAAGCTGGGTGAGGTGGCCCCCGCACCACACCCAGGGGGCAGGAGGACCCCAGTTCCAGGCCAGCCAGGCTACATAGTTTAAGGCCAGACTGAGCTCTGTCATTCAAGACCAGCAAGAAAAATAAAAACAAAAACTACACTTGATGGTTCACGATTGTAACCCCTGCACCAGAGAGGCTGAGGCAGGAGGATTGCTACAAGTTTGAATCCAGCCTGGTGTGCTTAGGATTTCCAGACCAGACAATGCAACATATTAAGATCCTGTCTCAAAAACAGCTACAATAGCAACAGCAATAATAATAAACCAAACTCAGCAGGCAAAGGCACTTGCCCCCAGGCCACATAACTGTTCTTTAGGTCTCGGGATGCATGAAGGAGGTAGGGAGGGGTTGTCTCAGTAACTCTAGGTCTGAAGCAGGAAGCATTGTCCTGTTTGGGGACTGCCTAGGAGTCCTGGACAGCCCTGGGTCACTCCAGCCATGGTGGGTGAGGGGACCCCATCTCAGGCATCAGGAGGACTGGGGATGATCCAGGCATTGCCCTGCCCTCGGGGCTAGCAGTGGCCTTGCTGGGGGTTGATGAGTGTGAGCTCCAGTAATAGGCTAGTCCATCCTGAGGGGTAGAACCCTGGGTGTGGGTGTCAGGCGGTGTTAGGTGGCTCCCTGGTGAGAAGAGACCTTCACTGCACCTGTGGGTGGGGGAAGGCAGGCCCCATGACAAATTGGAGGTGGATACCTTTAAGGCACCAGCATTCTGACCTATGGTGTCACGTAAGTCCATGTTCCTTGACCAGAGGCCAGGAGGGCAGGGTCCACCCCATCCTGACTTTCCATAGGGGAAGGCCGCACAACATTTGGGCCATGGTCAGAGTTTGTTGTGTTCATTGTGGGGCCATTAAATGCCACACCTCAGTCCCTAACGCCTCACACCAGCCAGGAGGGTGGTCTGTCCCCATCACCCCCCTTCTACAGACGACAAAGCTGAAGTTCAAGAAGAGAAGCCACAAGTCCCATCGTATATGCTGGGTGTGGAAGCCAGGCAGCTCCATGGGAAGGAACGGGGCATGCTTTTATGACATTTTAGGAGGGACTACAAACAGGGATGGGTGGGAAATTCCTCCTTACCTACTTGAGGTGGTTATGTGAACGAAGACGTGGTGGCGGCTGGTTAGAGGCTGTCCCCGCTCCCCACCCATAAGCTTAGAGCAGGACTGGCGGCTCGCTGCTAGCTGGCATCTTAATTGAAATCTATCAGCAGCTGTAGAAGGTGGGGAGGAAGCATTTAAGCAAGGCCTTGATTAGCTCTGCAGACGAGAAGCCCTGACAAGAATGTCAACCCAGAGGCCCTCAGCAGCCCTGTGGCATCACCTCTGCTTTCCTGCCCCTCCATCTCCTTCTCATTGAGGGCTTCCTCTGTTTCTATTGACTTACAGATGCTCTTTATATATAATGGCTACAGGTAGCTATCACACATGTCTGCTTTCATTAATTTACCTCTCAGCTTTTTCCCACTATTGCTTGTTTCCTGAAGTTTCAATTTTTGTATGTGTGTGTGGGGTGATATGGATGCAGGTAGGCATGTACGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCAGAGGTTGACCTCAGGTGTCTGTCATTCCTCAGGCACTGTTTACCATGCTTTTAAATTTCATTTATTTGTTCTTTTGTGTGTGTGTGTGTTTAAGATTTATTTATTTTATGTATATGAGTACACTATCGTTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGTCACAATGTGGTTGCTGGGAATTGAACTCAGGCCCCTGGAAGAACAGCCAGTGCTCTTAACCACTGAGCTATCTTTCCAGACCTCATTTTTTGTGTTTTTAATTTAATTTTATTTGTTGCCATTTATTGGGGGGGGGGGGGAATGTGTGCTTGCGCTATGGTTTGAGTGTGGAGATCAGGGGACAACTTAGGAAAGTTAGTTCTCTCCACTATGTTGAGGACTGAACTTAGGCTGTCAGGCTTGGCAGCAAGCACTTTTACCCACTGAGCCATCTAGCCAGCCCCAGTGCCAGGTACCTGAAAGGTGTGCCCAGAGCCTAGGACTGTTAACCCCAACTGTGGCATGCTGACTGTAGGTCTTTGGATCTCAGTGACCGTGTAGTAATGGGAAAAGGCATCTCCCAGCATCCCCTGGGGCTGTCTCCATCATACACCATTCCTGGGAAATGCAATCTGTCCCAGCTAAGGCCTGGAGTAGAATAGGGGTCTGGGTCCTTCTGCCTGGGTTCAAATCCCAGCTCCGCTGCTCGCCAGCTGTGTGATCTGACCAGGTGACTGCACCTCTCTGAGCCTTCCTTCTCCCACCCATACAGTGGGGCATTGTTATGCCCACCTCCCTGCGTCCTTGTCCAGCAGCAGCTAGTCCTGGGTCGAGTATGGTGGCATTGGTCACAGGCTGTGCTGCCTGATTGGTCACCATACAGGAGGTGCTCAGACTGGTCCCTGACTTCCAGGTGCCAGCTGTTGTCATTGTCACTTGCTGCCTGAGCATCTGTCTATCAGCCCTGCACAGGTGTGCAAGCCACACCCTGAGAGGGGAGAGTAGCTTGCCTTGATAGCACTAGCCCTGGGAGAATAGACCAGGCAGGGAGGCAGGGTGCAGTGGGATTGCCTGCTCTTGGGTGAACCCCACAGCCTCCAGGTCTTTGGCTGAACTGAGTCAGCAGCTCCGAGAGGGGCTGAAGGGGGGACAGGGATCCTGGGGTGATCTGTTGATTGCCTGGCAAAGAATATTGGGGCTGAGCAGGGAGGGTCCACAAAGCTCTCGAGCACACAATAACCCAAATACTAGCCTTCGGGAAGGGACTGATGGAACACTATAGGCGTGTGAACCTGCGAAGCGTTTAATTAAATGCCCTCTTAATCAAGGGTTGATCCTGATGGAAGGGAAGTGCCCTATTTGTGTGAGACCCTGAGATGGCCCAAGGGCCAGAGAGCAGGAGAGTGGGAGAGAGGAAGTGGGTAGGCAGCAGGAGTGTGCAGAACCAGGCCCGGGGATGGCAGGAGATGCTGGCACTGCCTTGGTTCTATGAACTGAGAAGTATTTATTGAGCGCTTGCCATGCCTGGTCCCACTGTGCCCACTGGGGTCGCAACAAACACTGACTGTAGAGTTGTGTTTGGGAAACTAGGCTGACTGGGAAATCCATAAGGAGCCAGGGAGAACCAGAATGGTGAATGTTAAGAAGGAGGAGGTCCCTGGGTCAGCACGGGAGAGCAGCCACCTTCCCAAGGCTGAAACAGAAAGGCAAACAGGCCATATAAAAAGACAGGCATGGAAAACACCACAAGATGGCTCAGAGGCTGGGCTCAGCCACCTGTGCCACCACCCATCTGAACTGCAAATTCCAGCGCTCTCTCTACCAGCTGTCACCTCAAAATGCATACATTTGGGGGACTGTGGAGATGGCTCAGTCAATAAAGAACCTCACTGTGGATCCTCATACCATGTTAAAAAAACAAAAACCCCCAAAACTAAGTTCAATGTCATTCAGTGTACCTGCACCACACGTCCTGGTGCTGAGGAGGTAGAGATGGGGTTACGGGATCCCTGGGGCCCACTGGCTAGGCAGCTTAGCTGAATCAATGAGCCCCAGGTTCAGTGAGAGACCCTGCCTCAAAAAATAAGGTGGAGAGGATGAAGGAAGACTCCTGAGATTGACAGGTACATGGGACGCCATCACCAATCAGACATGACCAATAAGCCTCTAGTTTCCTGCCCAGATCCCTCCTACAGGGAGAAGGGAAGTGGCCCAGAGAGCAGGGCAGCACACACTTAGCAGTTGTCCCAGCTCCTGTCTGGGTGGGTGAAGGGTATCCACCCCCTCCCATCCCTTGACTTCATCCATCTTCCTCCCCTCCCCCACCCTCAG
Seq C2 exon
GGCTCAAGCGGATTCACGCCCTGACCACACAAGCAGCATACGAGCTTCACGTGGACCTAGAAGACTTTGACAACGGCACCGCCTATGCCCACTACGGGAGTTTTGGTGTGGGCTTGTTCTCTGTGGACCCCGAGGAGGATGGGTACCCACTCACGGTGGCTGACTACTCCGGCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026841-Fibcd1:NM_178887:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.7=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: