BtaINT0062549 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017982 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr11:101169728-101170645:-
Coord C1 exon
chr11:101170466-101170645
Coord A exon
chr11:101169946-101170465
Coord C2 exon
chr11:101169728-101169945
Length
520 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
ACCTGTGTGCACCTGCGCAGGGG
3' ss Score
7.25
Exon sequences
Seq C1 exon
GGCTCAAGAGGATCCATGCTCTGACCACTCAGGCAGCCTACGAGCTACATGTGGACCTAGAGGACTTTGACAATGGCACAGCCTATGCCCACTATGGGAGCTTTGGTGTGGGGCTCTTCTCTGTGGACCCTGAGGAAGATGGATACCCGCTCACCGTGGCCGACTACTCGGGCACGGCAG
Seq A exon
GTAGGGGTCCAGGCTGCAGTGGGGGGTGGGGAAGGGCCGGGGCAGCCCAGCCACCTCCCCAGCTAGAAGGACAAAGGAAGTCTTTCTAGGCCAGGGGCCAGCATCAAGGCTTCTCATCACCACCACCAAATCCCCAGCTAGTCCTCATCCCAGCCACATAAAGCTCGCAGGGCCTCTCTCACAGAACCACCCATTTTGCAGATGAGCAAAGAGCCCAGAGCCAGGAATCAGGACATCTGGAGTTTGAGCTCTGCTGAGCCTCTCCACCCGCTCTGGGCTGGGTTTCTCCTCCCAGGGCCGAGGCAAGAAAACCCGGGAAAGGGTGTGTGACAAAGCTAGAAGGAGGGAGAGGCTGCGGGGACAGCCGCCGGGACCATCAGGGGGGCGCTGGGGCTGCCTGTGGACACCAAAGGTGTGGGAAGGGGCAGGTGCGCGCATGCTCACGTGTGTGCATCGTGCACGGGAAGCACGTGCACGCACCTGTGCCCCACTGAACACACACCTGTGTGCACCTGCGCAG
Seq C2 exon
GGGACTCCCTCCTGAAGCACAGCGGCATGAAGTTCACCACCAAGGACCGTGACAGTGACCACTCGGAGAACAACTGCGCCGCCTTCTACCGCGGCGCCTGGTGGTATCGCAACTGCCACACATCCAACCTCAACGGGCAGTACCTGCGCGGGGCACACGCCTCCTATGCCGACGGCGTCGAGTGGTCCTCCTGGACTGGCTGGCAGTACTCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017982:ENSBTAT00000023924:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(27.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(33.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGCTACATGTGGACCTAGA
R:
TTGAGTGAGTACTGCCAGCCA
Band lengths:
358-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development