GgaINT0124056 @ galGal4
Intron Retention
Gene
ENSGALG00000003866 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr17:6043774-6044930:-
Coord C1 exon
chr17:6044751-6044930
Coord A exon
chr17:6044552-6044750
Coord C2 exon
chr17:6043774-6044551
Length
199 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GGCTCCTTTACCTGCGGCAGGAG
3' ss Score
2.52
Exon sequences
Seq C1 exon
GGCTGAAGCGGATCCACGTGCTGACGGTGCAGGGCAGCTACGAGCTGCGCGTTGACCTGGAGGACTTCGACAACGGCACCGCCTTCGCACATTACGGCAGCTTTGGTGTGGGGCTCTTCTCTGTTGACCCCGAGGAGGATGGGTACCCCATCTCCATCTCTGACTACTCAGGGACAGCAG
Seq A exon
GTAGGGCCCCGCAGGGGACCAAATCCCATCCCCAGAGCATCCACTGAGAGCTGGAAGCTGAAGGGTGGCTGTGGTTGAGTGGTGAGCCCGAGTGCCCCATACGGCACCGAGAAGCTCCATTGGGGTACACTTTGGAAGGCACCCCGAGGGCAGGGAGAGGGGTGGGGAGGGCCCTTCACGGCTCCTTTACCTGCGGCAG
Seq C2 exon
GAGATTCCTTCCTGAAGCACAACGGGATGAAGTTCACCACCAAGGACCTGGACAACGACCACTCAGAGAACAACTGCGCGGCGTTCTACCACGGCGCCTGGTGGTACCGCAACTGCCACACCTCCAACCTCAACGGGCAGTACCTCAAGGGCCACCACAGCTCCTACGCTGATGGCATCGAGTGGTCCTCCTGGACCGGCTGGCAGTACTCCCTCAAGTTCACTGAGATGAAGATCCGGCCCGTCCGGGAGGAGAATTAGCGGATGGACAGAGCCCCCCCCGACCCCTGCCCTTCCCACTGCCCCGTGGTTCCCTTCCTCCTGGTGCACCCCATGCCGCTGTCCTGCCCTGGGGTCCTGTGGGAGCATCTCCCCACTGGGGACGATGGCTTTGTCCTGACCCCATGCCCTCTGCTCCCCACCGGGATGGGTGTCCCCTCCCTGGGCCACGCTCGATGCTCGCGGTGCGGTGGGGATTTGGGGAGCGGTGCACAAGGAGGGGAGGGGGCTGAGGGGCTGGAGGCCATTTCTGGGGTGCAGAGCCCCCAAGGTGCTACTGAAGACAGGGAGGGCTCTGCTGGGTCGGTGCTCACACGGGTGCCAGTGGTTCCTTCTCTGCCTGTAAACATTCTCCTCTCCGCCCTTCGAGAGGGGAAGGGACACCTACAGACCTCACTGCCGCTGCTCATGGAGCTGCACAGCGTATGGGCACAGCGCTGCAGGGATGGATGCCCACAGCCAAGCGTGGCACAAAGCTGTGTGGCAGCAGCAGGAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003866:ENSGALT00000006154:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(27.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(37.2=93.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCACATTACGGCAGCTTT
R:
CTTGAGGTACTGCCCGTTGAG
Band lengths:
246-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]