BtaINT0063151 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45513882-45514701:+
Coord C1 exon
chr19:45513882-45514134
Coord A exon
chr19:45514135-45514392
Coord C2 exon
chr19:45514393-45514701
Length
258 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
AGAGCCGGCTCCTGGAGCAGCAG
3' ss Score
-1.21
Exon sequences
Seq C1 exon
GAGCGCTTCAGCGAGTCGACCCTTATGGGCACCTCTAGACGTCCCTCTGAGCCCGAGAAAGTGCCTGCCCCTGTCCCGGCGCGGCCGTCGGCCCTAGAGCTGAAGGTGGAGGAGCTGGAGGAGAAGGGGTTAATCCGTATCCTGAGAGGGCCCGGGGATGCGGTCTCCATCGAGATTCTCCCGGTCGCTGTGGCAACTCCGAGCGGCAGTGATGCCCCGACTCCGGGGGCGCCTACCGGCTCCCCCAGCCCAG
Seq A exon
GTGTGCAGGAGCTTCAGGCTGGCGGGGGAGGCGAGTAGGAATGGGGGGGCTGCAGGGGGAGCCTGGGGACGTCTCAGGCCGGGAGAGGTGGAAGAAGTAGGTTTTGGTTGCCGGCGTGGCTCAGGTGCGGATGGGCCGCGGGGGGGCCAGTGCGCATGCGCAGGGCGGGGAGGCGAAATTGATACCACCTTCTTCCCGCTCGGTCCACGGTTCTAGCCTCGGAACTCCCACCTGTAGCAGAGCCGGCTCCTGGAGCAG
Seq C2 exon
CAGAGCCCGCTCCTGGAGCGGCACCGCCCCCGCCCCCGCCCCCGCCCCCTCCACCCCCACCGCCACTGCCCCCACTGCCTGGTCTCCCCTCCCAGCAGGAAGCCCCACCCCTGGCTCCCCCTCTGGCCCCGCCCCTCCCAGGCAGCCCCGAGCCCCCGCCCCCGCCGCCGCTGCCAGGCGACCAGCCGCCCCCGCCCCCGCCGCCCCCACCGCCTCCCGGCGCGGACGGGCAGGTTCCTCCGCCGCCCCCGCCGCCTCCGGGAGGTCCCACTGATGCTCAAGCAGGGCCTGACTCAGAGATGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(12.0=25.9),PF029949=Transposase_22=PD(39.0=48.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGCCCGAGAAAGTGC
R:
CCTGCTGGGAGGGGAGAC
Band lengths:
308-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development