HsaINT0065101 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45241382-45242146:+
Coord C1 exon
chr17:45241382-45241634
Coord A exon
chr17:45241635-45241846
Coord C2 exon
chr17:45241847-45242146
Length
212 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
CCGCGCCCTCGCTGGCTCAGATC
3' ss Score
6.84
Exon sequences
Seq C1 exon
GAGCGCTTCAGCGAATCGACCGCCATGGGGCCCTCCAGGCGTCCCCCAGAGCCTGAGAAAGCGCCTCCCGCTGCCCCGACGCGGCCCTCGGCCCTGGAGCTGAAGGTGGAGGAGCTGGAGGAGAAGGGGTTAATCCGTATTCTGCGGGGGCCGGGGGATGCTGTCTCCATCGAGATCCTCCCCGTCGCTGTGGCAACTCCGAGCGGCGGTGATGCTCCGACTCCGGGGGTGCCGACCGGCTCCCCCAGCCCAG
Seq A exon
GTGCGCAGGAGCTTCAGGCTGGCGGGGATGCGGGGCAGGGTCTGGAGGGGAGCCCAGGGGCATCTGTGGCGGGCAGAGTTGGGCGAGGGAGGTTTGGATTGTAGGCTCGGCTCAGGTAGGAGCGCATGCGTAGAGCGGAGAGGCGGAGAGGGGCCCACCCAAGTCAAGGAGCTGACTCGCGCCTCCCCCACGCCGCGCCCTCGCTGGCTCAG
Seq C2 exon
ATCTCGCACCTGCAGCAGAGCCGGCTCCCGGAGCAGCGCCACCGCCGCCGCCCCCACTGCCCGGCCTCCCCTCCCCGCAGGAAGCCCCGCCCTCTGCGCCCCCACAGGCCCCGCCTCTCCCTGGCAGCCCGGAGCCCCCGCCTGCGCCGCCGCTGCCCGGAGACCTGCCGCCCCCACCCCCGCCACCGCCACCACCTCCGGGCACTGACGGGCCGGTGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCTCCCGGAGGTCCTCCTGATGCCCTAGGAAGACGCGACTCAGAATTGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(4.6=8.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATGCTCCGACTCCG
R:
GGGCATCAGGAGGACCTC
Band lengths:
316-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development