RnoINT0061612 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91275689-91276455:+
Coord C1 exon
chr10:91275689-91275941
Coord A exon
chr10:91275942-91276164
Coord C2 exon
chr10:91276165-91276455
Length
223 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
TGGGCACCTCCCACCTGCAGCAG
3' ss Score
6.8
Exon sequences
Seq C1 exon
GAGCGCTTCAGCGAGTCGACCCCCATGGTCACTTCCAGACGAATCCCTGAACCTGAGAAAGTGCCTGCTCCTACCGTGGTGCGACCCTCAGCTCTTGAGCTGAAGGTGGAAGAGCTTGAAGAAAAGGGGTTAATCCGTATCCTGCGGGGACCGGGGGATGTCGTCTCCATCGAGATCCTCCCCGGCGCTGCGGCGACACCAAGCGGTGACGACGCACCAGCTCCGAGGGTGTCCACTGATTCCCCTAGCACAG
Seq A exon
GTGCGCAGGACCTTCATGCTAGGGGAGAGAGACCAGGGCAGGGAAGGGTATCCTGAGGATATACCTGGCTGTGAAAGACCAGGAGGTTAGATTGTAGGCGTGGCACAGGTACACTCAGGTGGGTTAAAATGGGTTCTGGACGCATGCATAGGAGAGGGAGGAGGGAAGGACCCAACCCCCCCCCCCCGCCAGGCAAGAAATAATGGGCACCTCCCACCTGCAG
Seq C2 exon
CAGAGTCAGTTCCCGAAGCAGCATCACCAACGCCTCCGCCACCTCCGCCACCTCCACCTCCACTACCTAACCTCCAGTCCCAGCAGGAAGCCCTTCCCTCTGCACCCCCGCTGGCCCCGCCCCTCCCAGGCTGCGCAGCGCCGCCACCTGCACCACCGTTGCCTGGAGACCTGCCTCCCCCACCTCCACCACCCCCACTTGGAACTGATGGACCGGTGCCACCGCCACCGCCACCACCTCCAGGAGGGCCCCCTGATATCCTTGGAGGACAAGACCCAGAGATAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(19.2=44.7),PF051307=FlgN=PD(7.1=7.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCATCGAGATCCTCCCC
R:
CGGTCCATCAGTTCCAAGTGG
Band lengths:
306-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]