HsaINT0065101 @ hg19
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:1212]
Coordinates
chr17:43318749-43319513:+
Coord C1 exon
chr17:43318749-43319001
Coord A exon
chr17:43319002-43319213
Coord C2 exon
chr17:43319214-43319513
Length
212 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
CCGCGCCCTCGCTGGCTCAGATC
3' ss Score
6.84
Exon sequences
Seq C1 exon
GAGCGCTTCAGCGAATCGACCGCCATGGGGCCCTCCAGGCGTCCCCCAGAGCCTGAGAAAGCGCCTCCCGCTGCCCCGACGCGGCCCTCGGCCCTGGAGCTGAAGGTGGAGGAGCTGGAGGAGAAGGGGTTAATCCGTATTCTGCGGGGGCCGGGGGATGCTGTCTCCATCGAGATCCTCCCCGTCGCTGTGGCAACTCCGAGCGGCGGTGATGCTCCGACTCCGGGGGTGCCGACCGGCTCCCCCAGCCCAG
Seq A exon
GTGCGCAGGAGCTTCAGGCTGGCGGGGATGCGGGGCAGGGTCTGGAGGGGAGCCCAGGGGCATCTGTGGCGGGCAGAGTTGGGCGAGGGAGGTTTGGATTGTAGGCTCGGCTCAGGTAGGAGCGCATGCGTAGAGCGGAGAGGCGGAGAGGGGCCCACCCAAGTCAAGGAGCTGACTCGCGCCTCCCCCACGCCGCGCCCTCGCTGGCTCAG
Seq C2 exon
ATCTCGCACCTGCAGCAGAGCCGGCTCCCGGAGCAGCGCCACCGCCGCCGCCCCCACTGCCCGGCCTCCCCTCCCCGCAGGAAGCCCCGCCCTCTGCGCCCCCACAGGCCCCGCCTCTCCCTGGCAGCCCGGAGCCCCCGCCTGCGCCGCCGCTGCCCGGAGACCTGCCGCCCCCACCCCCGCCACCGCCACCACCTCCGGGCACTGACGGGCCGGTGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCTCCCGGAGGTCCTCCTGATGCCCTAGGAAGACGCGACTCAGAATTGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922-FMNL1:NM_005892:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(4.1=8.2),PF138701=DUF4201=PD(7.1=8.2),PF029949=Transposase_22=PD(14.7=12.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATGCTCCGACTCCG
R:
GGGCATCAGGAGGACCTC
Band lengths:
316-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)