BtaINT0063155 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45516318-45516782:+
Coord C1 exon
chr19:45516318-45516552
Coord A exon
chr19:45516553-45516713
Coord C2 exon
chr19:45516714-45516782
Length
161 bp
Sequences
Splice sites
5' ss Seq
CCGGTGTGC
5' ss Score
4.89
3' ss Seq
CTCCCCCATCCCTCCCCCAGCAA
3' ss Score
8.62
Exon sequences
Seq C1 exon
GTATGACCTGCAGACCCTTGGCCTGGACTTCTTGGAGCTGCTGACCCGCTTCCTGCCCACAGAGTATGAGCGCAGCCTCATCACTCGTTTCGAGCGGGAGCAGCGACCGATAGAGGAGCTGTCAGAGGAGGACCGCTTCATGCTGCGCTTCAGCCGCATCCCCCGCCTGCCAGAGCGCATGAACACACTCACCTTCCTGGGCAACTTCCCAGACACTGCCCAGATGCTCATGCCG
Seq A exon
GTGTGCGCGGGCTGGCAGGGTGGTGTGGCCTGGGCTGGGATGGGGGAGGAGGCAGTTGGCAGCCTGGTCTCCGAGAGGGCATCTGAGAGTTCTGGAGCCTCCTACCAGCTTCCCCCTTGCTCCTGCCCCAACTTACCATGCCTCCCCCATCCCTCCCCCAG
Seq C2 exon
CAACTGAATGCCATCATTGCAGCCTCAATGTCCATCAAGTCCTCGGACAAACTCCGCCAGATCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(21.3=100)
A:
NA
C2:
PF0218118=FH2=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTTCTTGGAGCTGCTG
R:
ATTGAGGCTGCAATGATGGCA
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development