GgaINT0143089 @ galGal3
Intron Retention
Gene
ENSGALG00000000694 | FMNL1
Description
NA
Coordinates
chr27:1348108-1348497:+
Coord C1 exon
chr27:1348108-1348342
Coord A exon
chr27:1348343-1348428
Coord C2 exon
chr27:1348429-1348497
Length
86 bp
Sequences
Splice sites
5' ss Seq
CCGGTGTGT
5' ss Score
6.56
3' ss Seq
CGCTTCCCCTCCACCCACAGCAA
3' ss Score
9.2
Exon sequences
Seq C1 exon
GTACGACCAGCAGGCCCTGAGCCTCGACTTCCTGGAGCTGCTGCTGCGCTTCCTGCCCACTGAGTACGAGCGGACGCTCATCGGGAAGTTCGAGCGGGAGCAGCAGCCGCTGGAGGAGCTCTCGGAGGAGGACCAGTTCATGATCCGCTTCAGCAGGATCCCGCGCCTGGCCGAGCGCATGAACGTCATGATCTTCCTGGGCAACTTCAGCGACACCGCCCAGCTGCTCATGCCG
Seq A exon
GTGTGTGGGGCTGCGGGCGGCGCTGGGGGGGCTGCGAGGAGGCGGCATCCTGCAGGGAGACTCACGCGCTTCCCCTCCACCCACAG
Seq C2 exon
CAACTCAATGCCATCATCGCCGCCTCCATGTCCCTCAAGTCCTCCAGCAAGCTGCGCAACATCCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694:ENSGALT00000040749:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(23.8=100)
A:
NA
C2:
PF0218118=FH2=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGAGGAGGACCAGTTCAT
R:
CAGCTTGCTGGAGGACTTGAG
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]