RnoINT0061616 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91277948-91278351:+
Coord C1 exon
chr10:91277948-91278182
Coord A exon
chr10:91278183-91278282
Coord C2 exon
chr10:91278283-91278351
Length
100 bp
Sequences
Splice sites
5' ss Seq
CCGGTGTGG
5' ss Score
4.97
3' ss Seq
TATCTTCATCCCACCCTTAGCAA
3' ss Score
6.36
Exon sequences
Seq C1 exon
GTATGACCTCCAGACTCTCAGCCTGGATTTCTTGGAGCTGTTGACCCGCTTCCTGCCCACAGACTACGAGCGTAGCCTCATAGCCCGATTTGAGAAGGAGCAGCGGCCAATGGAAGAGCTGTCAGAGGAGGACCGCTTCATGCTGCGCTTCAGTCGCATCCAGAGGCTTCCAGAGCGAATGAATACACTCACCTTCCTGGGCAACTTTCCAGACACGGCCCAGCTGCTCATGCCG
Seq A exon
GTGTGGGCAAGACGGGCAGGGTGGTGTGGTGGAGTCTGGGCTGGTGGGTAGCTTCTAAGATGGGAGGCTCCAGCTTACTTTATCTTCATCCCACCCTTAG
Seq C2 exon
CAACTGAACGCCATCATTGCAGCCTCTATATCCATCAAGTCCTCTGACAAGCTTCGCCAGATCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(21.3=100)
A:
NA
C2:
PF0218118=FH2=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGACTCTCAGCCTGGAT
R:
ATAGAGGCTGCAATGATGGCG
Band lengths:
257-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]