BtaINT0063182 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43675044-43677375:-
Coord C1 exon
chr2:43677274-43677375
Coord A exon
chr2:43675357-43677273
Coord C2 exon
chr2:43675044-43675356
Length
1917 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
GACCATGGCCTCTTTTGCAGGAA
3' ss Score
8.71
Exon sequences
Seq C1 exon
TTGTCGGAAAAACTGCAGGATACAGAGAATGAAGCCATGTCTAAGATTGTGGAACTGGAAAAGCAGCTCATGCAGAGGAACAAGGAGCTGGATGTTGTTCGA
Seq A exon
GTAAGTGTGATGGTGGCAGCTGCCCCAGATGGGCATTGTCAGGAACCAGCTCTGGCTTTAACCCAGTAGACAGAACCCAGATGTGGTCATGGGCTTCCCAGGTGGCACCAGTGGTAAAGAACCTGCCTGCCAATGCAGGAGACATGGGTACAGTTCCTGGGTTGGAAAGATCCCCAGGAGAAGGAAATGGCAATCCACTCCATTATTCTTGCCTGGAGAATCCCATGGACAAGGTAGCCTGGTGGGCTACAGTCCACAGGGTTGCAAAGAGTTGCATATGACTGAAGCGACTTAGCATGCTCACGTACATGGTCACGGCAGAGGGATGCCTGGATGTAGCATATTTGCTGGAAGCATTTCAGAGGTGAAACTTGAAAGTAACTCATAGTGAGAGTATGTCTTCATATTTGTGTGCAGTCATATACTAGGGGTTCACTAGTTTCTTATCACAGGTTTTGGGAGCAACAATGTTTTCCCATCTGGACAAGTCTGAGTGGATTCTGTGGATCACCCATTTGGTTGAAAAGAAAAACAGCATGGATTTAATTCATGCCACTTATTTATTTTTATTAGACCTTGAGCTTCTTTGTATTTCTTTGCTTTGCTTCTGCTTGAAACCAGATTTGGTGGTTGCCTTGGAAACAGTGAAATCACAACACAGGCAAGACCTCCTGGCATTTACCAAAAAAGAAAAAGAAAGAAAAAAGGCAAAAGTAAAATCAATCCATTTTATTATCAGATAATCCCAGCTATTTTGTTTGGCTTTAGCATTGTTTTTATTTACAGGTCAGGTATTTATGGGGTACCATCCATGTGTTTGAACATAAAAACACCAAAATGGCTGGAAGGCTTTTAGGCAAATGGCTGGCTTTTATGCCCCCGTTAATGACATGGCATATTTTATGCGATGGTTATCATGTCTACGTGCATTGCTTGATATTCTGACAGGTCCTACAGTTAACTCTAGGAAATTTGTTTTCTGGCACACCATGGAGACAAAGTTGTAGCATATGGACTCAATTCAAGTTCAGACTCTCAGATTATTAATAATAGACAGGGTGTGAAGAATGTTTCCCTGCCTGCTAGAGGTTTGTGGTGAGAGATCACGTGTGTCAGGCCCAGAGAGTGAGTTCCATAAAATCCTTTCACTGGAGCCTCTGTGGGCCCCTTAGAAAAGGAACCAGGACAGCCTTTGAATTAAAAGTCGTGACTTCTTTGTTTTCTGCTAAGAACCTAGACAGAAATAAGTAATTAGTGGAGGGCAGCACTGGAATGTTTTGTTAACTGCATTACCAAAGCCAAAATGTTACAACAATTGCTGTCCTGGACTGAGCTTGGTCAAGGGGGCATTGCGAAGGCCAGAGATATCCATTCAAAACAGTCAGCCCCTGGTTATTCATGAGTGGATTATTCCATGATTTGCAGATTTTTAATCCCAGTCTGACTTCTATCCAAGTCTGATATAGGGACCTTTTGTCTGCTGTTAGCTGATATGTATCTAGGAGTTACAGTTAAATTTTAACAGAACTAAAAGGAAAACATGCTGTATTATCAGAATACCCTCAGGATATTCCCAAGTCAACTATAAAATTATTTTTGGATTACCTCTGCCCTTTTCCTCTTCACCTGTGGGGAAAACTGACTTAGCTATATTTACTAAAGGAAAGAACTACGTTAACAGTAACAATTGCTAGAACGCATGTATTGCATGCATTACCAGTGAACAGTTGATAACAATGAGACTTGATAGGTTCTGGCCAAATTCCATAGACTTTCTATATATATAAGTATCCTTTTTCTTTCTTCTGCTGCTTTTTTTTTTTTTTTCCATTTTCTTTACCTTCAATTTGCCAATCTAATGGTAATACGTATGGATGTCACGTGAAGACAAACTCTTGACCATGGCCTCTTTTGCAG
Seq C2 exon
GAAATCTACAAAGATGCAAATACCCAGGTTCACACATTAAGGAAAATGGTCAAAGAGAAAGAAGAAGCCATTCAAAGACAGTCTACCCTAGAAAAAAAGATTCATGAGCTGGAGAAACAAGGGACCATTAAAATTCAGAAGAAAGGGGATGGGGACATCGCCATACTCCCTGTCGTGGCTTCTGGCACATTGCCCACAGGGTCCGAAGTGGCGGTGGGTAACTTCGTGGGACCAGTAATGGGGGCCCCCTCCTCGGGACCCTTGCCTCCTCCTCCCCCACCACTACCTCTGTCGTCAGATGCACCTGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851:ENSBTAT00000065141:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=NA C2=0.905
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(16.1=100)
A:
NA
C2:
PF0636711=Drf_FH3=PD(21.0=41.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAACTGGAAAAGCAGCT
R:
TGACGACAGAGGTAGTGGTGG
Band lengths:
352-2269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]