RnoINT0061636 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38648946-38651142:+
Coord C1 exon
chr3:38648946-38649047
Coord A exon
chr3:38649048-38650829
Coord C2 exon
chr3:38650830-38651142
Length
1782 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
ACATGACCTTTTTCTTCCAGGAA
3' ss Score
9.87
Exon sequences
Seq C1 exon
TTGTCTGAAAAGCTGCAGGACACGGAGAATGAAGCCATGTCCAAGATTGTGGAACTGGAAAAGCAACTCATGCAGAGGAATAAGGAACTGGATGTCGTCCGG
Seq A exon
GTAAGTGTGCTGGCAGCATCCATCCCGATGTGTACGGCCTGGCATTCAGTGCGCTCTAGTTTAAGGCTGGTCCAGTGCAGAGAACGTTCACTTCAGAGGAATGCATTGAAGCCGTGTATCTACTGCAACCATTTCAGAGGTGTTTCTCAAAAGTACTCATACTGTACGTGTACACGCGTGTACGCAGTCTTAAACTCCAGCTTCGGTATTTCTTTACCACAGATTTTTGGGAGCAACAATGGCTTCCTATCTGGGAGAGACTGAGTTGACTCTGTGGATTCTCCATGTGGTTGTAAACAGAAACAAAGCACAAATTTAATTCTCCCTGCTTATTTTTTTTTATTAGAACTTGGGCCTCCTTGATCGTATGTGTTTACTTTTACTCAAAACCAGATTTGAGGGTTGCTATGGAAACAGCCCACAGCACAGGTTAGACCTAAAGATATTTCCCACAATCCAATGCATTTCCTTATCATCTAATCCCAGGCATTTTGTTTCACCTTATGTGTCAGGCACAGTTATGGAGGTTCAAACCATCTGCGTACTTGGAACTGTTCAGAACATAAGGCCAATAGGCCTGGAGGGCTGTCAGGCACATGGCTTGCTTTTGCACCAGCAGCTGATGTGACGGCACATTTTCTGTGATGGTTTTCATGTGCTGTTTTGAGATTCTGACACATCCTACAGTTAGCTCTGTGATACGTGTTTCCTGGCACGCCATCAGTACAGAGTTGTAGCATATGGACTCCATTCAAGTCCAGACACTTAGGTTACAAATGATGGACAGGGGGTAAGAAAGAATGTTCCCTTCCTGTTGGGGGTCTGAGGTGAGAGAGAACTTGTGCAGGTCCCAGACAGTAAGTTCAGTTCCACACAGCCATTCACACCAGAATATCCGTGGACTCCGAATAGATGCCCCCAGGGCGGCCTTTGAATCGAATTTTAACTTGCTATGAACTATAAACTTAGAGAAAGATAAGTAACTCATGGCGGGAAACTTTGGTTTTTTTTTAAATGCATCACCAAAAGGAAAATGCTCCAGCAATCGCCATCCTGAGCTCCATTAAAGAGCTTTCCTAAGGGCCAGAGAAATCAGCTATGCCGCCAGCGTCTGGCCATGCGTGAGAAGGTCACTCCTGGCTTGGCAGAGCTTCTGTGCTTGCTTACTTATTATATATCTTCTGGGGATAGGGTCCCAGTATGTATGTATCCCTGGCTGGCCTGAAAATCACTGCCCAGACCAACTAGGCCTCAAACCCACAGACATCACCTGCCTCTGCCTCCCCAGTCCTAGGATTAAAGGTGTACATCACCACAGCCAGCCTTTGTAGAGGTTTTTATCCGTTGTCTGATTTCTACTAAAGTCTGATTTAGGGGCTTTTAGTCTCTTGTTAGTCAGTGTCTATCTGGGAGTTACAGATACATTTTATTTTATGATTAGTAAAGGAAAGCATGCTGAACCACCAGGCTACCCATGCGATGTTTCAAATTCAGTTTGTGGATAAAGTCATCTCTGTTCTGTTCTCTTTCGCCTAAGGGCAAAGTGGCGTTAGTTCCACTAATTAGCTAGAAAGTTCTTCCTTAACACTATCCAATGCTCGAGTACATTGCATGCATTACCAGCTCAACTGATAATTACTCACTCAGACTCTCTATGTTCTGACTGAATCCCTACCGTGTGTTCTCTCTCCAACTGTTTCCCTCAGTTAGCTCACTCAGGGTCACCTGGGAATGTTCTATGAAGCCAGTGTCCTGAACATGAACATGACCTTTTTCTTCCAG
Seq C2 exon
GAAATCTACAAAGACGCAAACACCCAAGTTCACACATTAAGAAAAATGGTCAAAGAAAAGGAAGAAGCCATTCAAAGACAGTCTACCCTGGAAAAAAAGATTCACGAACTGGAGAAACAAGGGACCATCAAAATTCAGAAGAAAGGGGACGGGGACATTGCCATACTGCCGGTTGTGGCCTCTGGCACGTTACCCATGGGGTCAGACCTAGCAGGGGGTAACTATGTGGGACCAGTTCCAGGGGCCGCCTCCTCAGGACCCTCAGTCCCTCCTCCCCCACCACTACCTCCGTCATCAGACACACCTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.914
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(16.1=100),PF061486=COG2=FE(17.4=100)
A:
NA
C2:
PF0636711=Drf_FH3=PD(21.0=41.0),PF061486=COG2=PD(24.2=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACACGGAGAATGAAGCC
R:
GACTGAGGGTCCTGAGGAGG
Band lengths:
354-2136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]