GgaINT0047754 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37158278-37159655:+
Coord C1 exon
chr7:37158278-37158379
Coord A exon
chr7:37158380-37159339
Coord C2 exon
chr7:37159340-37159655
Length
960 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
TGTTTCTGTGGCATTTGCAGGAA
3' ss Score
9.41
Exon sequences
Seq C1 exon
TTATCTGAAAAACTCCAAGATACAGAAAATGAAGCCATGGCAAAGATTGTGGAACTGGAAAAACAGCTTATGCAGAGGAACAAAGAACTGGATGTGATTCGG
Seq A exon
GTAAGCGTGATGGGAAAACTCTGGCTGGGTGCCATGTTTCAGGGGAGGGGTCTGGTGTGCATTTTGTGTCTGGGAGGTAACAGCTGTCTTAATGGGCTGAGCAATTTCTGCTGGCCTTCTACTTGAGATCTGGGCTACGTTCAAAATTAGAATATCTTGTCTGTGCTCTCAAAGATGGGCGTTTAACTCTCTGAATATGCCAGCAAATCAGTGAACCGGATGAGTACATTGTATTGCTCAGGTCTGTAGTGTTTCTGGTTGAGTTTTGCACATGTGGTTGGCTTTGGAGAGGAGTTCAGGGTGGAAGTGGAGTCTTCCAGACTTAGGTTGCAAAGCATCCTGCACAACCTGCTTGCTGTGTACAATCCAGACACTATTTCTTGGTATGCTATTTCAAAAACAAGGATTACTAATATAATATTAACTAACCTCAGCCTAAAAGTTGCCCCAGAGCACATCTGGTATCTAGGCTTTCTTCTGAATGTCTGACTTGGCTACTTGCAGATACAATCTCCCCTTCAGATCAGGAGCCCTGTTCCTACTTCCCTCTATAGGTCAACATCTGCTCATAGGCAGAGCAACCAGCAAGGCGTCCGATACTCTGTGTTAGAGGAAGAGTCGAGGTAGCATACTAGTTCTGTATATTTAAGATTAACATAAGAAATGGAGACATTATAAAAATAAAACAAATAGCAATCAGAAATTCTGTGTCCCCGGGTGTTGTTACCTGGTAAGATTTCTCACAGGGCTCAGTGCTGCACACAGCCTTAATGCTGGCGTGGGAAAAACATAAAACAAGTTCTTCCTTACCCATGAAGATGTATGGTTTGCATGAAAATGCCTTGTTAGATAATGCCTGGCACAGTGCACAGTCTGGTGTCAGGCTGCCTTCTGTTTCTGGTGCTGGTATTCTGTTTTGTGAATACAAATGCAAATCACTTGTTTCTGTGGCATTTGCAG
Seq C2 exon
GAAATCTACAAGGATGCAAATAGTCAGGTTCACACCTTGAGAAAAATGGTGAAGGAAAAAGAGGAAGCCATCCAACGACAGTCAACACTGGAGAAAAAGATTCATGAGCTGGAGAAGCAGGGGACCATTAAGATCCAGAAGAAAGGCGATGGTGACATCTCGATCCTTCCTGTTGCTCTGGCCTCTGGGATGGTGCCAGCAGGGGCAGAGGCTGCAGCTGGCACGTGTGTCACACCGGCTGCTGGAGTTGCATCTTCTGTACCACTGCCACCACCTCCACCACCATTACCAGCCTTAGCAGCAGCATCTGAGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.805
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(16.1=100)
A:
NA
C2:
PF0636711=Drf_FH3=PD(21.0=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATGGCAAAGATTGTGGA
R:
TGGTGGCAGTGGTACAGAAGA
Band lengths:
343-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]