BtaINT0063210 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30362782-30363682:+
Coord C1 exon
chr5:30362782-30362856
Coord A exon
chr5:30362857-30363571
Coord C2 exon
chr5:30363572-30363682
Length
715 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CCGGGCTGCTCCTCCCCCAGGTG
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTGTGCAAGGAGCTGCACCGCTTTGAGAAGCTGATGGAGTATTTCCGGAATGAGGACAGCAACATCGACTTCATG
Seq A exon
GTGAGGAGCTGGGCTGGGTCAGGTGCTTGCCCAGCAGGGCCACCTAACCCTTGAGAGCTGGGCCAGGCCGACAGTGTGCTTTGGTATTCTGTGTAGAACCGCAAGTGGTTCTCTACTCAGTAACTGCTGCTTGTCCACTCACCCCAGAGGAAACTCCAGGACGAGGTCATTTTTCTGTCTTGGGTCTGGTTCCTTTCCTCCTTTTTTTGGCCTTACGGTCCCTGATTTGGATCCTTCCTGAGCAGCTTTCCTTTCCCCCAGCTTTTCCTCTGGCTTCACTTCTCTTCAGTCGAAGGTGTTCAGCTGGTAGGGTGGTCTCAAGAAATACCTGCTGAGGGACTTCCCTGGTGATCCAGTGGTTAAGATTCTGCACTTCCACTGCAGGGGGCACAGGTTTGATCGGGGAACTAAGATCCCACATGCCAGGTGATGTGGCCAAAAAATAAAAATAGAAGTAAGTTAAAAAAAAAAAAACCTGCTGATGTGCAAAGGAAATCAGAGCACAAATCTTCATTTATACTCATTTCTCTTATAGTTTGTCTTCATACACTGAATATTGTTTGACTTAAATGAAAATACTCTTATTTTGCTATTGTTCCCCAAAGCCTTCCCGATTTACTCACTCCTTTTGATTATCCCCTGATGATGCTGGTTCTGCCAGCCACCTACCATCTCTGTCTCAGCTCTCTGACCCTCCGGGCTGCTCCTCCCCCAG
Seq C2 exon
GTGGCCTGCATGCAGTTTATCAACATCGTGGTGCACTCAGTGGAAGACATGAACTTCCGGGTCCACCTGCAGTATGAGTTCACAAAGCTGGGGCTGGAGGAGTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593:ENSBTAT00000022075:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(12.1=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(18.1=100),PF061486=COG2=PU(11.0=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]