MmuINT0065131 @ mm9
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99156074-99156359:-
Coord C1 exon
chr15:99156285-99156359
Coord A exon
chr15:99156185-99156284
Coord C2 exon
chr15:99156074-99156184
Length
100 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
AGGCTGCCTCTCTTCCCCAGGTG
3' ss Score
10.07
Exon sequences
Seq C1 exon
GTGTGTAAAGAACTGCATCGGTTTGAGAAGCTCATGGAGTATTTCCGAAATGAGGACAGCAACATTGACTTCATG
Seq A exon
GTGAGGACCTGGGTCTGGGCCAGATGCATGCCATGTCTACTGAAGCATTGCTGCTGAGGCCAGGGCCGCACTGTGTTCTGAGGCTGCCTCTCTTCCCCAG
Seq C2 exon
GTGGCCTGCATGCAGTTCATCAACATTGTGGTGCACTCGGTAGAGGACATGAACTTCCGGGTCCACCTGCAATATGAGTTTACCAAGTTGGGGCTGGAGGAATTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008-Fmnl3:NM_011711:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(12.1=100),PF061486=COG2=PU(1.2=8.0)
A:
NA
C2:
PF0636711=Drf_FH3=PU(13.9=95.2),PF061486=COG2=PU(9.7=66.7),PF101864=Atg14=PU(0.7=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTAAAGAACTGCATCGGT
R:
AATTCCTCCAGCCCCAACTTG
Band lengths:
179-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: