GgaINT0047751 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37153064-37156912:+
Coord C1 exon
chr7:37153064-37153138
Coord A exon
chr7:37153139-37156801
Coord C2 exon
chr7:37156802-37156912
Length
3663 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TGTGGTGGCTCCTCTTGCAGGTG
3' ss Score
10.58
Exon sequences
Seq C1 exon
GTGTGTGGAGAGAAACAGCGCTTTGAGAAGCTGATGGAGCACTTCCGAAACGAGGACAACAACATAGACTTCATG
Seq A exon
GTGAGCACTCCTTATCTGCGGACTTTGGCTTTGGTGTTGGCTCTGTGTGCTCCTGCTGTCACGTGCAGCACTCAGATGTATATGGCCTGAAATTATTGCAGTACCGTTTTTTAGCATTCCAAACTGTGTAATATAACTCTCATGCTTTAGCTTCAGTTTAATTATCGCCAAGAAATGTCGAGTGCCATAGTGGGGTTAATGGGAAAGAAGCTTTTGGCTGTGTGTGCTGTTTCTATGTGGCAGAATAGCAGCATCTGCAGTATCAAGAAGCATATTCTGTACGTGTGCCAACATCCTCAAAATCAGAGACAGGGAAGTGTGGGAGACACTCATTGCAGCTGTCTGTCCTTATCTGGGGGTAAATATAGCAATAGTTTTCACCACTTTGGTTCCTCATTGTGCATGTGCATGATTATTCACCAAACCCACTTCCCTGGAGCACAGCAGAAAAAGCAAAAGAGGAAGATCTTACTGACACCCACAGGTGGCAATGCCAACTTGCACGTTGCAAACATGTGAAGGGCTGAGGGTCGGCACAGTGTTCATGTATTTGGTATCAGAAATGCCTCTGTGTCCATTCCTTTAAGTCTGTGGCAAGTGTGTGGTCATGCTGATTAGAACTTCCATTTTTAATTACAGAACAGATGCAGTTCAGGTATGGTCAGTGCAGTCTCCCTTGTGCTGCTTATTATTATGACATGATTCCACTTGGAGGTGAGAGAAGAGCAGGAGGGTTCCCCAACTGGTGACATTCACTGTTCTGTTGTCTCTGTTAAGCCTGCATAGACACTTCATGCTGTTCAGGCGCAGGCTTTTTGTTAAAGACATCTTTCTGCCAGCAATTAGGTGTTAAACCAGCTGGAGTGGTGCCTCCTATGGGCCGTGAAGGTGTAAGTGCCAGTGACTTGCAGCCCCAGTGGGCAGGGCCAGGCTTGCACCCCTGGGAGCATGGCAAAATGAAAAGAGCAAGATAGGATGGCCTTTTTTACTCATAGTCCAAAAAAGAATATGCTACACAGATCTCTGCAATTTTACTAAAGTTAGCAAGCTGCTCTCAGTAACTCTGTGATGTTACATTGGTTTTGTTCCTTGTTATTGCAGTCCCAGTAAGGACATGTTGCTAGTCGCAGTGTTGGTTAAGTATTCTCAGATGTATGTTCAGTTAGCCTGCAATTTAGCAGAAGGATTTGTCTGTCCCCAGTGCCTGACTCAGTCACTTCTCCCATGCTGACAGGGGAGGTGTCTGGGAGCAGGAGAGCAGTGCAGCTTAGTGCAGGCCAGGAGCAAGACGGTGGCAGCAGCCTGCAGCTTGCTACCTTGCCCTTGTTAGTAAGAATGTCCCACAGCGTTCCTCACCTTTAGTTAAGATGAGAAGTGGTGTAGTGTGAAGGATGGAGTAGGGAGCGTGAGCCCAGTGAGCCGTGAATATTCAGCATCCATCTGGGCATTCTGTTTCATCTTCAGGAAAACTCCGTGGTGTTTCTCTCAGGCTGTAGGCTGCAGGTAGTGGTGAATTGCTCAAAAAAGGATAAATGCATTTTTTTTGGACTTGCCCAGGTACTTACAAGGTCTGCATCTTTGTGTTGCTTATACCAACCGAGGGCTTGAATGTCTGACAAGCCTAAAGCTCGAAGAGGGAGCTCATGACAAACGATTTGGCAGGCCTGCTCGTTCCTGTCGCCATCTGGCCCTGATGCACTCCACATGCTGCTGTGGGCAGCACCCGAGGAGTGCTCCTGGGGGGCGAGAAGGGGCTGTGGGGCTGTGAGAAGCCATGCTGGGGCTCCTGCCCACCCCTCCGCCGTGCTGCACTGCGGGGCTGCACCGCTTGCCAAGGGTGTACTAAGGCAGCAATCCTTCCTTTCTGCAGGATGGAATCAAACAGGTCCCAGAGCCAAGTCTCCAGGATGTAATGTGAAAGCTGGAGTAATTCAAGTAGTTGCAAGGGCTGAACACAAACAGAGCTATTCCTGCAGGAGCTGGCTTTCAGGCTGCCCTAGATGGAGAAGACGAGAGCTGTCTGTGAAGTTGGAGCTGAAAGGGGTTACATTTAATTGCATTGATCTGATGGGAGGAAAGAGAAACAAAAGGCAGAAGTATTTTAGGGAAGGTTCCTGTTGTTGACACTGACATACTTCATTTTAAGAGCAACTTTCTTGGATTAATTTTCTTTGACTTGATAAATTCCTTAGTTGTATATGTAAGGATCTGAGAAAGGAAATGAGAGTTTGGCCCCAGTGTTGCAAGAGCCAAAGCAAGTATAACAAGAGCACTTTTGAAATACGGGAACTTGGCAGTGGGTGATTTGACAGGACAGCAGTGTTCAGCTGGCCAAGGCCAGCTCCAGCACCAGGAGGAACCAGAGCTCTCCAGGGGAGTTGGAAAGAGTCTTCTGCTCTGCACAGGCTCAAAAGCTAACGGCATGAGCAGCGTAGTTTGTGTAAGAAGCAGGTACATGCTGAGGGACAGGAATAAGACATCACAGAGCTTGTTGTGTCCATGCGGTCCCTGATGAGCCCAAGCTAGCTCAGGCTGGGAGGAGCACTGTGGACATCCCAGCCAAACCTGCTTCCAAAGGCTGCTGGGCAGCAGACACCTCCCCATGAGTTTATTCTCTGGGAAGATGTATCTCAGTGATTGTTGAGAAGTTGGCGTTACTTCTGTCTGCATCTGTGGTGGTTGGGTTCTGCCCTGCTCAGACCCACCAAGGATGAGGCAGACTTCTTACAGATTGGAGGTGGTCACTGGAGAGGTGAAGGGGTGCTGGGGATGTGCAGAGAGGGATTTGGCTGTGCCTTACATTCCTCAGCGGGGCAAACCTTCGTGGGGCTTCAGGCGTGATTCCTGCCCTTCTGCAGGTACCTTGCCCTGCTGTCTGAGGGGCTCTGGCTCCCCTTGCTCGAGGGCCTTGACTTGCCTGCACTGTGCTGGGATGCAAGCCACAGTTTTAAAAATACGTTTTCTACAAATAACAAAGCACCTTTTATGAAGTCTTTGCAAGCCTGAATCCAACGCTGATGGGGTAGAAAGCTGCAGAATAGCAAACGGCAGTTTTCCCTGGCAACAGCCGTAGCAAAATGCAGTCCCTGGCAGTGCTGGCTGGCCCAGGGGGCCTGGCATCCCTCTGGGCTCGGAGGGCCTGCTCCAGTGCTAGGGATTGGGATTGGGAGCTTCTGGAGAGGTCCAGAAGAGGCCACGTGGGTGATCAAAGGGCTAGAGCTCCTTTCCTATGAAGACAGGCTGAAGGAACGGGACTTACTTGGCCTGGAAAAGAGAAGGCTGTGGGGAGACCTCATTGCAGCCTTTCAGTATTTAAAGGGAGTTTATAAACATGAGAGAAATCAACTTCTTACACAGGTAGATAGTGACAAGACAAGGGAGAATGGTTTTAAACTAAAAAAGGGAGATTTAGGTTGGATATCAGGGGGATGCTCTTTACTGAGAGCGTGGTGAGCTGCTGGCACAGGCTGCCCAGAAAGGTGGTGGGTGCCCCATCCCTGGTGGTGTTTAAGGCCGGGTTGGATGGGGCCCTGGGCAGTCTGACCTGGTGCTTGGGCAGGGGTTGGATCTTGATGATCCTTGAGGTCCCTTCCAGCCCAAGCCACCCTATGATTCTATGACTCAGGGCTGTGACATGCTCATGTGTGGTGGCTCCTCTTGCAG
Seq C2 exon
GTGGCTTGCATGCAGTTCATCAACATCGTTGTGCACTCGGTGGAGGACATGAACTTCCGGGTCCATCTGCAATACGAATTTACAAAGCTGGGCCTGGACGAGTATTTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]