RnoINT0061657 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38640568-38645183:+
Coord C1 exon
chr3:38640568-38640642
Coord A exon
chr3:38640643-38645072
Coord C2 exon
chr3:38645073-38645183
Length
4430 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCTTGAAAATTTCATTTCAGGTG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTCTGCGGAGAAAAGCAGCGTTTTGAGAAGCTGATGGAACATTTCAGGAATGAAGATAATAACATAGATTTTATG
Seq A exon
GTGAGTTGCCTTGGCCCTCCTTTCAGCAACACAAATCCAGTTTCAAAACACACCGCCATATTCAAGTCTGCCCAGTACAAAGCTCAGGAAAATGAAGTTAGTGATCCACTCTAGAATGTTTTCTTTATGTTCCCTTTCTGGTGCTTTTTCCAGGTTTACTCCTTTGATTAAAGGATAGAACTGCTGATAATTTAATGAGTAAGAGGGAAAGTCTCATGGTTGGAAAAAGGAAGTCATGACCTAGTGTGGATGCCCATAGCCACCATGTTGAGCGCCTAACGGCCTAAGCTAGGTGGGCCTTTGGCCTTTTGCTCTTGCAGCTTTTCAGTGGCCTCTCTAGACCACACGCTCACAGACTAAAGTGGTTGGCTTTGCTGACTGGACCGTTGGCATGTCTAGATGGACCCAATGCTGCTGGGTCTTCTTCCTTGTGCTTCCTTCCCACTGTGGCTAACCCCAGGGTGTTTCAACACTTCTGAATCCCAGTACCCCAGTCTTCATTCTGGGCTCAAGACAGAATTTCTCACGAGGCTTCCTTAGCCATTGCATTCCAGTGCACCCCTGTCCTTGTCCTTGACCTAGTTCAGTTTCGCACACTTCTGGACCCAGGGGTTCCTTCTGTGGAGCACTTGCCTTCAGAGCTTGCATCCTTCCTAACTGTTCTCTCATGCGAGGCCTGTCCTGTGGCCTCTCAGTCATGTCTTCATTAGCGTTGCTGCCATGACCGTAGGGCTTGAAACACCAGGTTTGTTTTGTGTGAAACTCATTTCTTGGACGTCAGGTTTGTGTTAATCTTAGTTTCAGCTTCTTTAAAATCCGGATGGTAAAATCCTTATAGAAGAACAGTCAGTGCTTTTAACCACTAACCTTTTCCGTTCCATTAGATATGGTATTTTGTAAAAATTAATTATTTTAATTATTTACATTCCAGCATTTGCCCCTTCCTCCCATCTTCCCCCCTTCCTCCTCCCATTCTCCCTTCCCCTGCCTCCGAAAGGGTACCTACCCCTTTCCCGATACCCTCTTCATCTTCTCCCACTGAGGCCAGACTAAGCAGTCCTCAGCTGTATGTGCTAGGGGACCTGGACCAGCCCCTGTATGCTGCCTGGTTGGTGGCTCAGTCTCTGGGAGCTCCCTGGGGTGTCCAGGTTAGTTGAGACTGCTGGTCTTCCTATGGGGTTGCCTTCTCCTTCTGCTCCTTCAATCCTTCCCCTAATTCCTCCGTAGGGTCCCAGACTTCAGTTCAATGGCTGGGTGTAAGTATCTGCAGCTGTCTCAGTCAGCTGTTGATAGGGCCTTTGAGAGGACAGCCATGCTAGGCTCCTGTCTGTGTCCCTGGTTACTGCAGACCTCCTGAGAGACAGGCAGCTGTGGGGTAGGGTAGGGTAGGGTATCAGGCCTGGCAATAATTGTGGTAATTATTTTTCAACTTATTTTTTAAAGTATGAAATAGTAAAGCAAAGGTCGCTTTTACAGTGAATTTTTAATTCTTGTTATTAGGGTCAGAGGTCATTCAAGGTGATGCTGAAGGTGTTGATAAATGTGTGAGAAGCCCCAGGCTGTGGCTCACTGCGAGCCTCTTTCTAATGCCTTCTCAAGAGGAACTTTCTTATTCAGACAGAGCCCAAGCCGAAACCAACCTACACAAGGCCATGCTCTTTTACATGATGGCTTCTTCTGTGAAAATTGATGGGTGTATGATGCATGAAAACTGATGGCAGATCTTTTCTTTTTAAAGAATTATTTACTCATGTATGTGAGCATACTGTAGCACATGGCTTATAGGCTGTCCTGAAACTCAGCGGATCATTTAGAATTGTTTTCAGAAGAGACAAGGAAAAGTATCACAAACCTATTTTTCTCCAGAAAATGCGGCTTTTGATAAACTTCCTTGGGAATTCCATTAGATTTTCCAGCTTCCCAAATAATATATTCATTATATTAAACAGTGTAAATTTCTTCACAATTATAATATTTTTGTGACTTTTTTTTAAGTAGGTAAGAACTCAGAACAAACAAACAACAATAAAAGCCCAAAACAACCTGACGAGATTTTCTTTTGAAGATTTTTATTTATTTTATGTATGAGTACACTGTAGCTGTCTTCAGACACACCAAAAGAGGGCATCAGATCCCATTATAGATGGTTGTGAGCCACAGTGTGGTTTCTGGAAATTGAATTTAGGACTACTAGAAGAACAGTCAGTGCTTTTAACCACTAACCTATTTAACCATCTCTGTAGCCTAACAAGATTTCTTTTTTTAAAGTTTATTTAACTAGAGAACCTAAACAAAATTTTCAGAAACTTCAGTGGGGGGAGGTGTCCCTTTTTCATTAAGAGAATTTATGCATCTTCCAAAGCTATCCAGTACATACCTGTTCTAGTTTCATGTGTCGTGTAATAATATAACCTGACAAAAAGCAGCTAGAGAAGAATGTGGTTTATGTGACTTGCAATTCCAGGTTATACGCTATTATTGTAGGGAAGTCACCACCTCAGAATCGTGAGACAGTTGACCATCGTATCACATCTGCAGTAGAGCAAGAATGAATGCTTGCTTTCTTATTTGCTGGCTTGTTTTCAGATTGACTTCACTCATATATAGTTCTAGACCCCTGTCTAGGGAATGGTACCACCTACAGTGGACTGCATCTTCCCATATCAGTTAGTTAAAACAATTCTCCATTGTACATAGACTCATTAAGACTTTCTTCTTAGGTGATTCTAGATAGTGTCAAGTTGAAAATTAGAATTAATCACCTGAGTAACCTATAATTTAAAAAGAATTAATTCAATAAAAAAAAGCTAAAAGAAATAGGGGGCCTGGGAATCAAGCTCAGGAGTCAAGGACTTGCCCAATTTCAGTGCCTAAGACTGAGTTTGATTCTAAGCCCTTGGGAGGGAAGGAGGGGGGGGACATGGGTAGAGGGGTGGGGTTTTCCAGGCTGTGAATCTGGATCCCTGATTATTTTCCCTTCTTCTCAAAGCCTCTGCTGGAGCACTCATAGAAGGCAAACATGAGTAAGACATTGTTCCCATCAATAGATGGGCATTGTTGAAAACACTATGGGTCTGTTGAAGTTCATTCCATTATTTATTAAACTGAGGACTGACTTTTTTTTCCCTCTGAGACAAGTCTTAGGGCCAGTCTTTGGGAAAAGGCACTACAGCCATGAACTAGCAGTTAGGAAATCCACAGAGGGATGGTGGGAAAGATTAGTTACTATCTTTTGGTAGGATAGAGCTCAAAGTGAATTTTCGAAGTAATTACCTTGTCGTGACGTTCTACATTGTGTGGCTATTACTCCTCTTGGCACCAAGTTTCCTATTTTATATGGTCTGTATCTCTGTGGTAATTTGTACTTTGCTCTATATATCTGTATGTCAGAACAGCTTTCTTGATATTACATTTGCATACATCTACTTCACCCATGGACGTGTATGATTTGATGTGTGTTAACCATTCACAGTTTAGTTATAACCACATCCATCCCCTGAAGAATTCCTAGAGTCCTGGAGACATGGCTCAGTGGTTAAGAGCACTGACCATTCTCCGCAGAGGTTCTGAGTTCCGTTCCCAGAAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGAGACAGTGTCCTCACATATGTAAATAAATCTTTAAAAAAAATAATAAAAGAATCCCCCTGCTATTAAAAGCTGTTTCCCATGTGCTCTATCCTTCAGCCCTAAGGTATGTCTATAGGTTGGGGTGTTCTGCACATTGGAGATGAGTAGAGTCATACAATGTTTGGTCCTTTTTCACAGGCACGGTTTTCACTTTCCACGTCATTCCCAGACTCATCCATGCCACAACATGCAGCAGTACTTCAGTGTCACAGAATGGTTACCTCATTCTGTTTGTCCATCCAGTGATGGACACTGGGTATTGTTCCATAGTTAGGTGGTGTATGTGGTATTATAAATATCTGTGTACAATATTTTTTGTGGCCACGTTTCTTTATTTCTCTTAGTAACGTAGTTGCATTCCTATGGCAGACAGCAAACATGGTGCTTAACATTTTGAGTAACTGGTGTTTTCAAAGTGACTGTATCATTTTATAGTCTCACAAGCAATGGGGGGAGGGTCAGGTTTCTCTATATCTTTGCCAATATCACATATATATATATATATATTTCTTACATTATAGTCATTCTAAGTGACCATGAAGTGGTGTCTAGTTGTGGTGCCTGTTTGATTTCTTTAATGAAAAATTATAATTTTTTTTTTCTTGAAGATTTAGTGACATTAAGGGCGAAAAGGGAATTGGTGTGGACTAAGACTTGTGGAACGAGGCACCTACTCTGGACATGCTTTTGAGAGAAAGCACGTGGAGTCATTTTAACCCCTTGAAAATTTCATTTCAG
Seq C2 exon
GTGGCCTCTATGCAGTTTATTAATATTGTAGTCCATTCGGTAGAAGACATGAACTTCAGAGTTCATCTCCAATATGAATTTACCAAATTAGGCCTGGATGAATACTTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100),PF061486=COG2=PU(11.1=84.0)
A:
NA
C2:
PF0636711=Drf_FH3=FE(17.6=100),PF061486=COG2=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]