MmuINT0065105 @ mm10
Intron Retention
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:53097271-53101536:+
Coord C1 exon
chr2:53097271-53097345
Coord A exon
chr2:53097346-53101425
Coord C2 exon
chr2:53101426-53101536
Length
4080 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTTTGAAAATTTCATTTCAGGTG
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTCTGCGGAGAAAAGCAGCGTTTTGAGAAGCTGATGGAACATTTCAGGAATGAAGATAATAACATAGATTTTATG
Seq A exon
GTGAGTTCTCTTGGCACCCCTTTCAACAATGAAAACTCAAGTTTAGGCCCCCTTTCCTCCAAAACACACGCCACAGTCAAGTGGACACAGTAAAGAGCTCAGGCAAACGAGGTTAGTCATCTATTCTAGAGTGTTTTTCTTTATGTGAATGCTCCCTTTCTGGAGCCCTTTCAAGTTTCACTCATTTGATTAAAGGACAGAAATGCTGATAATTTAACAAATAAGAGGGAAAGTCACATGGTTGACAAAAGGAAGTCACGACTTAGTGTGAATTCCCATAGCCACCAAGGTGACCTGCATAGAGGCCTCAGCTGGATGGAACTTTGGCCTTTCGCTCTAGTGCCCTCTCTAGACCACATGCTCACAGACTAAAGTGCTTGGCTTTGCTGACTGGACCATTGGCTTCCTAGCTGGAGATGGTGTTGATGGCTCTTCTCCCTTTGGCTTCCTTCCTGCCTGCCTGACCCCTACCTGGGGCGTTTCTGAATTTCAGCTCCTAAGTCTTCATTCTGGGCTCAGGACAGAGTTCTTCATGAGGCTTCCTTGGCCATTCCTTTCCAGTGCAGCCCTGTCCTTGTCCTTGACTGAGTTCAGTTGTCCTAGGAAACTTGCCGGCCCAGGCGTTCCTTCTGCGGAGCTCTTGCCTCCAGAGCACGCATCCTGACAGTTCTTGCATGCGAAGCCTTTGCTAAGGCTGCTCAGTCACATCTTCATTAGATCTGCAGTGACTGTAAGGCCTGAAACACACTAGGTCTTCAGTGGGAGACTCATTTCTTGGATCTCAGATTTATGTGAATCTTAGTTTCAGCTCCTTTAAAATCCTGATGATAAAATCCCTTATAGAGCTTTTTTGTTCCATTAGACATGGTAATTTTAAAAAATTAATTATTTATTTACATTCCAGCCTTTGTCCCTCCCTCACGGTCCCACCCACTGAATTCCTCGCCCAATCCCCCATTTCCCTTGCCTCTGAGAGGGTTTCCCTCTCCTGAACCCTCTTCCTTTGGCGCATCTTCTCCCACTGAGGCCAAGACTAGGCAGTCCTCAGTTATACAGGTGCTGGGGAGTGGTGGTGGTGGGGCTTGGACTAGCCTGTGTATGCTGCCTGGTTGGTGGCTCAGTCTGGGATCTTCAGGTTAGTTGAGACACTTAGTCTTCCTATGGGGTCACCCTCCCCTTCAGCTCCTTCAATCCTCCCCCCAATTCCTCCATAGGGGTCCTTAACTTCAGTCCAATGGTTGTGTGTAAGTACCTGCATCTGTCTCAGTCAACTGTTGGGAGGGTCTCTCAGAGGACAGCCATGCTAGGCTCCTATCTGTGTCCCTGGTTACTGTAGATCTCCTGAGAGACAGGCAGGCTGTGGGGTGTGGGAGGGTATCAGGCCCAGAGATCTTGTGATAATTATTTTTAAACCTATTTTTTAAAGTATGAAATGGTAAATACAGAGGTCGTTTTTACCGTGAGTTTTTAATTCTTGTCATTAGAATCAAGGGTCATTCAAAGTGATGCTGAAGGTATCAGTAGGTGTGTGATTAGCCCCAGGCTCATTTCGAGCTTCTGAGTGCCTTCTCCAGAGGAGCTTTCTGAATCTGGCAGAGCCCAGGCTGAGGCCAGCCCACACAAGGCAGTGCTTTTGTACACGATAGCTTCTTCTGTGAAAATCTATGGGTATGATACATGAAAAATGACAGTTGATCTTTTCTTTTTAAATAATTTATTTTATGTATATGAGCACACTGTCATGGTCTTCAGACACACTAGAAGAGGGCATTGGATCACATTAGAGATGGTTGTGAGTCACCAAGTGGTTGCTGGGAATTGAACATAGGACTTCTGGAGAAGCAGTCAATGCTCTTAACTGCTAAGCCATCTCTCCAGCCCCTAATTTTTATTTATTTATTTATTTTTAAATTAAAAGTACCCAATTATATTTAGGCCCTCCTTCTTGGCTATTGGAGTATTAGCTACTACAGCCAAGGAGCCCCTAATTCTTTGATGTTAAAAACAAACAAATTCCTCTCTGCCATTTGTTAAGTTATACCTTGCCCACCTCACTCATTTATGGTGCCTGCTGCATTTCTGCTGAAGTTATCTTACGTAAGTCCCTTAACTTGTGAGCTATTTGCATACAGACCAAAACCCATTTTCTGTCACTGTACTAACTCCTATGCAGGTTCTGACTTCCCTGTGTATAGGCTGCGGTGTGCAAGATGTCTCTGCATGCCGGTTATCATTTGCGTGTAACTGCACGTGGCTCGCAGGCTGTGGTGGGACGCAGCGGATCTTTTAGACTTGTTTTCAGAAGCGAGGGGGGCATGTGTAGAGGGATGGGGTTAAGGGGTTTTCCGAGTGCTGTGATTTCGGGTCCCTGATTATTTTCCCTTCTTCCCAAAGCCTCTGCTGGCTCTTGCATAGAGGGCAAACATGAGTAAGCCATTGTTCCCATCAGTAGATGGCATTGGGGAAAACACTATTGGTCTGTTGAAGTTCATTCCATTATTTATTAAACTGGAGAACATTTTTTTTTTTTTTGAGACAGGTCTTAGGGCCAGTCTTTGGGAAAAAACACTACATCCAAGGCATTTACAAACTAGCAGTTAGGAAATCCACGGAAGGACGCTGTGAAAGATCAGTTACTATCTTTTGGTAGCTAGAGCTCCAAGTGAGTTTTTGAAGTAATTACCTGTGGTGAGGTTCTGCATTCTTTGAATATTACTCCTCTTTGTACTAAGTTTGACATTTTATATGATCTCTATCTCTGTGTTAACTTGTACTTTGCTCTGTATACCTGTATGACAGCTTTCTTAAACTTAGATGTGCATGCATCTACTTCACCCATGAAAGTGTATGATTTGGTGTGTGTTAACCATTCACAGTTTAATTATTACTACACTCATCCCCCTAAGAGTCCCTCTGCTGGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGATTGCTCTTAATTGCATTTCCCAGCCAACCACGTGGTGGCTCACAGCCATCTGTAATGGGATCCGATACCCTCTTCTGGTGTGTCTGAAGACAGAGGCAGTTTACTCACATACATAAAATAAATAAATCTTAAAAAAAAAAAAGAATCCCTCTTCCATTAGAGGCTGTTTCCCATGTGCTCTGCCCTTCAGCCCTAAGTATCTACTAATCTACTTTTTATCTCTATAGTTTGGGGTGCTCTGCACATTAGACACAGATGGAACCTTACGATGTTTGGCCCTTTTCTCAGGCATGGTTTCACTTCCCATGATGCTCCCAAGTTCATCCATGTCATAACATGCAGCAGCACTTCACTGTCACAGGATGGTCCATGGCAAGGGCATCCTCATTCTGTTTATCCACCAAGTGATGGATGGATGCTTTGCCATACTTGATTGGTATATGTGGCATCATGAATGCTTGTGTACAAATTTTTATGTGACCATGTTTCTTTATTTCTTTAAGTTAGGTAATTGAGTTACTAGAACAGACAGCAAACATGGTGCTTAATATTTTGAGTAACTGTTGTTTTCAAAGTGGCTGTATCATTTTCTCACAGGCAATGGGTGAGGGTTGGTTTTCTCTACATCTTTGCCAAAAACATTCGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTCTTACATTATAGCCATTCTAAGTGAATGTGAAGTGGTGTCTAATTGTGGTGCCTGTTTGATTTTTTTAATTAAAAATTATAAGATTAATTTTTCTTGAGGATTTAGAGACATTAAGGAAAAAGGAGGCTGGGCATGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTATCTTGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAGTGGGGGGGGGGGGGAAAGTGGTGTGAATTAAGACTTGTGAAATGAAGTGCCTATTCTGGATATATTTTTGAGAAAAATAACTTGGAACCAACTTAACCCTTTGAAAATTTCATTTCAG
Seq C2 exon
GTGGCCTCTATGCAGTTTATTAACATTGTAGTCCATTCAGTAGAAGACATGAACTTCAGAGTTCATCTACAATATGAATTCACCAAATTAGGCCTGGATGAATACTTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053:ENSMUST00000090952:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types