MmuINT0065105 @ mm9
Intron Retention
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52956305-52960570:+
Coord C1 exon
chr2:52956305-52956379
Coord A exon
chr2:52956380-52960459
Coord C2 exon
chr2:52960460-52960570
Length
4080 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTTTGAAAATTTCATTTCAGGTG
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTCTGCGGAGAAAAGCAGCGTTTTGAGAAGCTGATGGAACATTTCAGGAATGAAGATAATAACATAGATTTTATG
Seq A exon
GTGAGTTCTCTTGGCACCCCTTTCAACAATGAAAACTCAAGTTTAGGCCCCCTTTCCTCCAAAACACACGCCACAGTCAAGTGGACACAGTAAAGAGCTCAGGCAAACGAGGTTAGTCATCTATTCTAGAGTGTTTTTCTTTATGTGAATGCTCCCTTTCTGGAGCCCTTTCAAGTTTCACTCATTTGATTAAAGGACAGAAATGCTGATAATTTAACAAATAAGAGGGAAAGTCACATGGTTGACAAAAGGAAGTCACGACTTAGTGTGAATTCCCATAGCCACCAAGGTGACCTGCATAGAGGCCTCAGCTGGATGGAACTTTGGCCTTTCGCTCTAGTGCCCTCTCTAGACCACATGCTCACAGACTAAAGTGCTTGGCTTTGCTGACTGGACCATTGGCTTCCTAGCTGGAGATGGTGTTGATGGCTCTTCTCCCTTTGGCTTCCTTCCTGCCTGCCTGACCCCTACCTGGGGCGTTTCTGAATTTCAGCTCCTAAGTCTTCATTCTGGGCTCAGGACAGAGTTCTTCATGAGGCTTCCTTGGCCATTCCTTTCCAGTGCAGCCCTGTCCTTGTCCTTGACTGAGTTCAGTTGTCCTAGGAAACTTGCCGGCCCAGGCGTTCCTTCTGCGGAGCTCTTGCCTCCAGAGCACGCATCCTGACAGTTCTTGCATGCGAAGCCTTTGCTAAGGCTGCTCAGTCACATCTTCATTAGATCTGCAGTGACTGTAAGGCCTGAAACACACTAGGTCTTCAGTGGGAGACTCATTTCTTGGATCTCAGATTTATGTGAATCTTAGTTTCAGCTCCTTTAAAATCCTGATGATAAAATCCCTTATAGAGCTTTTTTGTTCCATTAGACATGGTAATTTTAAAAAATTAATTATTTATTTACATTCCAGCCTTTGTCCCTCCCTCACGGTCCCACCCACTGAATTCCTCGCCCAATCCCCCATTTCCCTTGCCTCTGAGAGGGTTTCCCTCTCCTGAACCCTCTTCCTTTGGCGCATCTTCTCCCACTGAGGCCAAGACTAGGCAGTCCTCAGTTATACAGGTGCTGGGGAGTGGTGGTGGTGGGGCTTGGACTAGCCTGTGTATGCTGCCTGGTTGGTGGCTCAGTCTGGGATCTTCAGGTTAGTTGAGACACTTAGTCTTCCTATGGGGTCACCCTCCCCTTCAGCTCCTTCAATCCTCCCCCCAATTCCTCCATAGGGGTCCTTAACTTCAGTCCAATGGTTGTGTGTAAGTACCTGCATCTGTCTCAGTCAACTGTTGGGAGGGTCTCTCAGAGGACAGCCATGCTAGGCTCCTATCTGTGTCCCTGGTTACTGTAGATCTCCTGAGAGACAGGCAGGCTGTGGGGTGTGGGAGGGTATCAGGCCCAGAGATCTTGTGATAATTATTTTTAAACCTATTTTTTAAAGTATGAAATGGTAAATACAGAGGTCGTTTTTACCGTGAGTTTTTAATTCTTGTCATTAGAATCAAGGGTCATTCAAAGTGATGCTGAAGGTATCAGTAGGTGTGTGATTAGCCCCAGGCTCATTTCGAGCTTCTGAGTGCCTTCTCCAGAGGAGCTTTCTGAATCTGGCAGAGCCCAGGCTGAGGCCAGCCCACACAAGGCAGTGCTTTTGTACACGATAGCTTCTTCTGTGAAAATCTATGGGTATGATACATGAAAAATGACAGTTGATCTTTTCTTTTTAAATAATTTATTTTATGTATATGAGCACACTGTCATGGTCTTCAGACACACTAGAAGAGGGCATTGGATCACATTAGAGATGGTTGTGAGTCACCAAGTGGTTGCTGGGAATTGAACATAGGACTTCTGGAGAAGCAGTCAATGCTCTTAACTGCTAAGCCATCTCTCCAGCCCCTAATTTTTATTTATTTATTTATTTTTAAATTAAAAGTACCCAATTATATTTAGGCCCTCCTTCTTGGCTATTGGAGTATTAGCTACTACAGCCAAGGAGCCCCTAATTCTTTGATGTTAAAAACAAACAAATTCCTCTCTGCCATTTGTTAAGTTATACCTTGCCCACCTCACTCATTTATGGTGCCTGCTGCATTTCTGCTGAAGTTATCTTACGTAAGTCCCTTAACTTGTGAGCTATTTGCATACAGACCAAAACCCATTTTCTGTCACTGTACTAACTCCTATGCAGGTTCTGACTTCCCTGTGTATAGGCTGCGGTGTGCAAGATGTCTCTGCATGCCGGTTATCATTTGCGTGTAACTGCACGTGGCTCGCAGGCTGTGGTGGGACGCAGCGGATCTTTTAGACTTGTTTTCAGAAGCGAGGGGGGCATGTGTAGAGGGATGGGGTTAAGGGGTTTTCCGAGTGCTGTGATTTCGGGTCCCTGATTATTTTCCCTTCTTCCCAAAGCCTCTGCTGGCTCTTGCATAGAGGGCAAACATGAGTAAGCCATTGTTCCCATCAGTAGATGGCATTGGGGAAAACACTATTGGTCTGTTGAAGTTCATTCCATTATTTATTAAACTGGAGAACATTTTTTTTTTTTTTGAGACAGGTCTTAGGGCCAGTCTTTGGGAAAAAACACTACATCCAAGGCATTTACAAACTAGCAGTTAGGAAATCCACGGAAGGACGCTGTGAAAGATCAGTTACTATCTTTTGGTAGCTAGAGCTCCAAGTGAGTTTTTGAAGTAATTACCTGTGGTGAGGTTCTGCATTCTTTGAATATTACTCCTCTTTGTACTAAGTTTGACATTTTATATGATCTCTATCTCTGTGTTAACTTGTACTTTGCTCTGTATACCTGTATGACAGCTTTCTTAAACTTAGATGTGCATGCATCTACTTCACCCATGAAAGTGTATGATTTGGTGTGTGTTAACCATTCACAGTTTAATTATTACTACACTCATCCCCCTAAGAGTCCCTCTGCTGGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGATTGCTCTTAATTGCATTTCCCAGCCAACCACGTGGTGGCTCACAGCCATCTGTAATGGGATCCGATACCCTCTTCTGGTGTGTCTGAAGACAGAGGCAGTTTACTCACATACATAAAATAAATAAATCTTAAAAAAAAAAAAGAATCCCTCTTCCATTAGAGGCTGTTTCCCATGTGCTCTGCCCTTCAGCCCTAAGTATCTACTAATCTACTTTTTATCTCTATAGTTTGGGGTGCTCTGCACATTAGACACAGATGGAACCTTACGATGTTTGGCCCTTTTCTCAGGCATGGTTTCACTTCCCATGATGCTCCCAAGTTCATCCATGTCATAACATGCAGCAGCACTTCACTGTCACAGGATGGTCCATGGCAAGGGCATCCTCATTCTGTTTATCCACCAAGTGATGGATGGATGCTTTGCCATACTTGATTGGTATATGTGGCATCATGAATGCTTGTGTACAAATTTTTATGTGACCATGTTTCTTTATTTCTTTAAGTTAGGTAATTGAGTTACTAGAACAGACAGCAAACATGGTGCTTAATATTTTGAGTAACTGTTGTTTTCAAAGTGGCTGTATCATTTTCTCACAGGCAATGGGTGAGGGTTGGTTTTCTCTACATCTTTGCCAAAAACATTCGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTCTTACATTATAGCCATTCTAAGTGAATGTGAAGTGGTGTCTAATTGTGGTGCCTGTTTGATTTTTTTAATTAAAAATTATAAGATTAATTTTTCTTGAGGATTTAGAGACATTAAGGAAAAAGGAGGCTGGGCATGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTATCTTGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAGTGGGGGGGGGGGGGAAAGTGGTGTGAATTAAGACTTGTGAAATGAAGTGCCTATTCTGGATATATTTTTGAGAAAAATAACTTGGAACCAACTTAACCCTTTGAAAATTTCATTTCAG
Seq C2 exon
GTGGCCTCTATGCAGTTTATTAACATTGTAGTCCATTCAGTAGAAGACATGAACTTCAGAGTTCATCTACAATATGAATTCACCAAATTAGGCCTGGATGAATACTTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-Fmnl2:NM_172409:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100),PF061486=COG2=PU(11.1=84.0)
A:
NA
C2:
PF0636711=Drf_FH3=FE(17.6=100),PF061486=COG2=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: