BtaINT0063752 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008994 | FPGS
Description
Bos taurus folylpolyglutamate synthase (FPGS), mRNA. [Source:RefSeq mRNA;Acc:NM_001024480]
Coordinates
chr11:98503184-98503455:+
Coord C1 exon
chr11:98503184-98503264
Coord A exon
chr11:98503265-98503393
Coord C2 exon
chr11:98503394-98503455
Length
129 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TGCCCTGTGATCCTCTGCAGGTA
3' ss Score
10.95
Exon sequences
Seq C1 exon
GACGACAGCAGCTGTGTCTCCATGCCCGGCTACTTCCGCTTCCTCACGCTCATGGCCTTCCACGTCTTCCTCCAAGAGAAG
Seq A exon
GTGTGTATGGCCCCCTCCCCAAAACCCTGTGTTCCAGACCTTGGGAAGGGGAATCTCAGCAGGTTAAGGGCTCCCATGCGGTGTCCGGGAGCCCCTGTGCCCCCTGCCATGCCCTGTGATCCTCTGCAG
Seq C2 exon
GTAGACCTGGCAGTGTTGGAAGTAGGCATTGGCGGGGCTTACGACTGCACCAACATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008994:ENSBTAT00000032762:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(12.6=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCAGCTGTGTCTCCATG
R:
TGATGATGTTGGTGCAGTCGT
Band lengths:
139-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development