DreINT0069637 @ danRer10
Intron Retention
Gene
ENSDARG00000044809 | fpgs
Description
folylpolyglutamate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2781]
Coordinates
chr21:6017906-6019835:+
Coord C1 exon
chr21:6017906-6017983
Coord A exon
chr21:6017984-6019773
Coord C2 exon
chr21:6019774-6019835
Length
1790 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
3' ss Seq
TGTCTTTGTGTCTTGTACAGGTT
3' ss Score
11.36
Exon sequences
Seq C1 exon
GATGCCCATGGTGGCAGCATGCCTGCTTATTTCCGCTTTCTCACTATCTTGGCCTTCCACGTCTTTCTTCAGGAGAAG
Seq A exon
GTGAACAGCGTTAATCATCTAAATTACCTGTATTAGTATTTATTTCATTGTCTGTTAGAGCTGTGGTGAAAGATCAATTGAGAAATTGATTCTGAGATATTCAAAATGCATTGCTATTCTCCACTGAGTTGATTCTGATCTTAGCTTTTTAGAGCAGGTGGTGTTTTATACTCCACATACAGTCGTTCTCTGCTTACTGTTAAAAACAAAGCTCAGAATAAATAGTGATGCATTTTGAAAACTGATGCAGGATAATTTTCTCATAGAATTTTTTTGCACATCTGTAAGATCTGAAAGGGTACAGCTGTCATGCTAGGTTTTACTACAAAAAGAAAAAAAACGTAAAGAACTTGACACCAATATTAACCTAAAACTACATTCTCTGTCTGTCTTCTGTTAAAAACTAGCGTTGGACACCTTCTGCTGTCAGAGTTGAATCGAGAGAAAATAGAGATGCATTTTTGAAGATCTCTGAATCAATGCAGAATCAATTTTCTTGAAAAGATTATTCACCACAGCTCATGTTTGTAATGTCTAAGGCCCTGTTTACACTAATGCATACTATTTAGTTTTAAAATGCAAAAGTTTTTCTAGGTTACAGCTTCCGTCCACACTAACCCAGAGTTTTTGATCCCCGAAAATTGACCGTTTTGAAAATGCCAAAGAAGCCGTTTTTCATTTTAAAATGCTGCTGCTCTCTGTCAGTGTGAATGGGGGGAAATGGAGACATCCATTGATGACATGGGGGGGCTGCAGACATTCGCCGATTAGGGCTTTTTTACAATATTAAGTACACAAAGTTCAGTCTTACATCCTTTTCTTGTAAGTTCAGACTTCGCAAGTTTGATATGGAAGACGAACTCGCAAGAACACATCGGATAAATCTTTAAATGGACTTTATAATGTCATTGGCATACGCTGGCTACATTGTTTCACTATCATTTCAATATAATGAAAACATGATATAGGGAACTGCCTATTTTCAAATTGATATTAACAACTTGGCAGACACAAAAAATGTTGAGGCGTCGTGTAGCAACATATTTATATGACCGTCATCTTCATGCATATTTCTAACAGAAAAGAGGCTATATCATAATTGCTTCCTTTCAATTTCATTAAAAAACACAGAAAACAGCCACTGTTTTACTGAAAATCAGTTTTAATAATAAATAATGGCCATTATAAAAGTAAAACGTAAAATAAGTTTATACAATATTGGAAATAAATGCAAGATATTAGTCAAATGTGCAGAATCTGTGTACGTGGTTACATAAATTAATCTTAACATATCTTTACGCTTAGCCAAAACGCGTTGCCTGAGAACAAGTAATAGATTTAAAAGACCAAAGAGTCGTTAGATAGAGACAAGATTAATGAAATATCTATTTAACAATTATAGTGAGATGAAATCCAGAGGAAGATCCTTGATGAACTGTCTGATGTGCGCTGCTCTCACTTAGGCAGGTGTGCTCAAAGCACCCGCTGACTGCCTTGAGCTCAGACGTCCGCATACGCTGCAGTGCAAGCCAGAGTGTGTGTGGTCACGTGATGTGCGTTTTCAGCGGTGTAGTGTGGATGTAGAGCTGTTCAGAAACAATAGGTGAAACGCCAGTGTGGATGTGGATCGATTTCATTCTAAAACACTGTTTTAATCTTAAAACGTATTAGTGTAAACAGGGCCTAAGAGCCTATATCTTTTGTGCTAGGTTTCAGAAAAAAAACTTAAAGGACATGACACTGTTATTAATTATCTCAATCTAAACTCTCTGTCTTTGTGTCTTGTACAG
Seq C2 exon
GTTGATTTGGCCGTTATTGAGGTCGGGATTGGTGGAGCGTACGACTGCACCAACATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044809:ENSDART00000141607:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(11.8=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]