GgaINT0124150 @ galGal3
Intron Retention
Gene
ENSGALG00000005051 | FPGS
Description
NA
Coordinates
chr17:5521684-5521917:-
Coord C1 exon
chr17:5521840-5521917
Coord A exon
chr17:5521746-5521839
Coord C2 exon
chr17:5521684-5521745
Length
94 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TAACTGTTCTGTGCACCCAGGTG
3' ss Score
8.28
Exon sequences
Seq C1 exon
GACGAGTATCAGGCCAACATGCCGGCTTACTTCCGCTTCCTCACCATCATGGCCTTCCAAGTCTTCCTGCAGGAGAAG
Seq A exon
GTGGGTGCTAAGGGGGTCTGTGGGGATGGGTTGGGGTCAGACGTGGGGGTCTGAGAGCTCTTTTCCGGCTGCTGTAACTGTTCTGTGCACCCAG
Seq C2 exon
GTGGACCTGGCGGTGGTGGAGGTGGGCATCGGTGGTGCCTTCGACTGCACCAACATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005051:ENSGALT00000008101:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTATCAGGCCAACATGC
R:
TGATGTTGGTGCAGTCGAAGG
Band lengths:
135-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]