BtaINT0064745 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010184 | G6PC
Description
Bos taurus glucose-6-phosphatase, catalytic subunit (G6PC), mRNA. [Source:RefSeq mRNA;Acc:NM_001076124]
Coordinates
chr19:43596426-43597260:+
Coord C1 exon
chr19:43596426-43596531
Coord A exon
chr19:43596532-43597144
Coord C2 exon
chr19:43597145-43597260
Length
613 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
GACTGCCTTTTCTGTCGCAGGTG
3' ss Score
10.87
Exon sequences
Seq C1 exon
GGAGTCCCTCTGGCCACGCCATGGGTACAGCAGGTGTATACTATGTGATGGTCACATCCACCCTCTCTATCTTTCGTGGAAAGAAAAAGCCAACCTACAGATTTCG
Seq A exon
GTAAGAACTCAGCTCTGGGTTATGGGTGGTGGATGGCAGGAGGTGTCTCTGTAGCGGACATACCGCTTGCTCTTCCTCCATGCCCTCTGCCCACCTCATGCCTTGGGGTGGTACTAAAAAGAGTTGTGGCATTTCTGCCAGGAGTAAACATTAGAGTCACAGAATGTTAGGGGTAGAAGGGACCCATATGGGCAACATCTAATTTTAGAGATCAGGAACAAGGCCTAACAGAAGAGGGCTTTCTCAAGATCAGCTAGTGAGGAAGAAGCAGGCGGTAAATAAAAGCCCATTTCCGTACCAAACATTGCGATGCCCCATCCAGGTTGAAATAAACAAAGAAGCAGAAGACACTATTTTTATGGGGAATTCTGAGTATGCAGCCACTGAGCAAATTCTTCATTATGAAACATAAAATAGAGAGGTTGAAATTCACATACACAGGGGTTCACCACTTGCCATGGCTATCTTTGAAATTTTGAGTACAGTCTTCAACTTACAAAAAATTCCGCTAATACAACCTGAGTTTGCCAGGCTCCAGTGTTGCTGCTGAGGCTATTCTTTTTGGTGAAGGATCTATATCTGGATTTTCTTATGACTGCCTTTTCTGTCGCAG
Seq C2 exon
GTGCTTGAATGTCATGTTGTGGTTGGGATTCTGGGTCGTGCAACTGAATGTCTGCCTGTCACGAATCTACCTTGCTGCTCATTTTCCCCATCAAGTTGTTGCTGGAGTCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010184:ENSBTAT00000013436:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(24.0=100)
A:
NA
C2:
PF0156916=PAP2=FE(26.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCCTCTGGCCACG
R:
CTGACAAGACTCCAGCAACAACT
Band lengths:
222-835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development