DreINT0070784 @ danRer10
Intron Retention
Gene
ENSDARG00000013721 | g6pca.2
Description
glucose-6-phosphatase a, catalytic subunit, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-050309-17]
Coordinates
chr12:6010788-6011119:+
Coord C1 exon
chr12:6010788-6010896
Coord A exon
chr12:6010897-6011003
Coord C2 exon
chr12:6011004-6011119
Length
107 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ACTGTTTGTTTTCTTCTCAGATA
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTAGCCCATCAGGTCATGCTATGGGTGCTGCTGGTGTTTACTACACACTGGTCACCTCCATCCTCGCCATAATGCTTAGCAAAGGGAAGAAATCAACATCCAATAGCCT
Seq A exon
GTAAGTCAATCCCTATCATACAATAAAGTCATTTGACATCACCTGGAGCTTTGGTTTCAAATTAGTGGCTTTGTGCAATGCATTCATACTGTTTGTTTTCTTCTCAG
Seq C2 exon
ATACTTGCGTGGCTCACTTTGGACACTCTTCTGGACGGTCCAGATCTGTGTTTGTCTCTCTCGGGTCTTCATCGCCGCTCATTTCCCACATCAAGTTTTCGCTGGTGTCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013721:ENSDART00000091868:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(24.5=100)
A:
NA
C2:
PF0156916=PAP2=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATCAGGTCATGCTATGG
R:
AATGACACCAGCGAAAACTTGA
Band lengths:
218-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]