HsaINT0066917 @ hg19
Intron Retention
Gene
ENSG00000131482 | G6PC
Description
glucose-6-phosphatase, catalytic subunit [Source:HGNC Symbol;Acc:4056]
Coordinates
chr17:41059540-41061435:+
Coord C1 exon
chr17:41059540-41059645
Coord A exon
chr17:41059646-41061319
Coord C2 exon
chr17:41061320-41061435
Length
1674 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
GGTTGCCTCTTCTGTTGCAGGTG
3' ss Score
10.88
Exon sequences
Seq C1 exon
GGAGCCCCTCTGGCCATGCCATGGGCACAGCAGGTGTATACTACGTGATGGTCACATCTACTCTTTCCATCTTTCAGGGAAAGATAAAGCCGACCTACAGATTTCG
Seq A exon
GTAAGAACTCACCACTGGGGTGTAGGTGGTGGAGGGCAGGAGGCAGCTCTCTCTGTAGCTGACACACCACGTATTCTTCCTCACATCCCCCTAGCCCGCTCCCACACCTGGGCAGCCGCTGATTAAGAGTTGTGGCACTTTGGATAGGGATAAACCTCAGAGTCAGGGAATGTTTGGGCTGAAAGGGATCCAGTAGTGCAATCCGTTGTTTTACAGATAAGGAAACAAAGCCCAACACCATGAAGGGACTTATAAAAATAAGGTAGTGAAGTAGCAGCAGGGCTTAAATAAAAACCCATGTCTGTACCAACCACAGAGTCACCCATCCAGGTTAAAATAACCAGAGAAACAGAAGATATTCCTACTACAGAGAATTCCGGGTGTGCAGCCACAGTGCAAATCCTTTTTATTTTTATTTTTGAGATGCAGTCTCGCTCTGTCATCCAGGCTGAAGTGCAGTGGCACGATCATGTCTCGCTGCAACCTCTGCCTCCCAGGCTCAAGCGATCCTCCCACCTCAGCCATCTGAGTAGCTGGGACCACAGGCCACACACCACACCCAGCTAATTTCTCGTATCTTTTTGTAGAGACAGAGTTCTGCTATGTTGCCCAGGCTCAGGCTGGTCTTGATCTCAAGCAATTGGCTTGCCTCAGCCTCCTAAAATATTGGGATTACAGGCATGAGCCACCGCGCCAGCCATGCAAATCCTTAATTATCAAACAGATAAAATAGGGAAGTTAAAATTCATATACACAAGGGTTAACCACTTGCCACAGGCATTTTTTTTTTTTTTTTGAGACGGAATCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCCATCTCGCCTCACTGCAACCTCCGCTTCCTGGGTTCAAGCTATTCTTCTGCCTCAGCCTACCGAGTAGCTGGGACTACAGGCACGTGCCACCACACCTGGCTAATTTTTTTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTAGTGATCCATCCGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGGCATGAGCCACCGCGCCTGGCCTTTTTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTAGAGTGCAGTGGCGCAGTCTCGGCTCACTGTAACCTCCACCTCCTGAGTTCAAGCAATTCTCCTGCCTCAGCCTCTCAAATAGCTGGGATTACAGGCGTGAGCCACCCCACCTGGCTAATTTTGTAATTTTTTTTTTAGTAGAGATGGGGTTTCACCTGTTGATCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAAGCATAAGCCACCGTGCCTGGTCAATTTTGATCTTTTTTAAAGAGACAGGGGTCTTGCTATGTTGCCCAGACTAGTCTTGAACTCCTGGCCTCAAGTGATCCTCTCACCTCGGCCTCCCAAAGTATTGGGATTACAGGTCTGAGCCGCTGCACCCAGCCCCCAACAGGCATCTTTGGACTTTTGAGTACTGGCTTTAATTTACAAAAATTCCACTGAGAGCACCTAAGTTTGCCAGGCTCCAACATTTCTGCAGGGGCTGTTTTCTTTGCTGAAGGATCTGCACCTGTGTTCTGTTATGGTTGCCTCTTCTGTTGCAG
Seq C2 exon
GTGCTTGAATGTCATTTTGTGGTTGGGATTCTGGGCTGTGCAGCTGAATGTCTGTCTGTCACGAATCTACCTTGCTGCTCATTTTCCTCATCAAGTTGTTGCTGGAGTCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131482-G6PC:NM_000151:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(36.6=94.4)
A:
NA
C2:
PF0156916=PAP2=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGTATACTACGTGATGGT
R:
TGACAGGACTCCAGCAACAAC
Band lengths:
192-1866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)