BtaINT0065026 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008056 | GAD2
Description
Bos taurus glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) (GAD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205723]
Coordinates
chr13:26937414-26938232:+
Coord C1 exon
chr13:26937414-26937489
Coord A exon
chr13:26937490-26938172
Coord C2 exon
chr13:26938173-26938232
Length
683 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CCACCTGTCTTTCCTTGCAGCCA
3' ss Score
12.26
Exon sequences
Seq C1 exon
ATGGCATCTCCCGGCTCTGGCTTTTGGTCCTTTGGATCTGAAGATGGCTCGGGGGATCCCGAGAACCCCGGCACAG
Seq A exon
GTAGGAGAAACGGTACCTGCAGGCGGAGAGCTTTGCGGGCGGACTGGGATTTGAGGGGCTGGGGAAGATTGAAGGTTTTCCCACCTGCAACAGGAGACTTCGGACGCTTAGCCCTGCCCTCGGGGTGGGTCCTTGATGACCCAACAGACTAAACCCCACAGGCTCTTATCCCCTGGGAAGATGCCCAGGGACCGTCTGGTTCTTTTCGCTGAAATCTGGGAGAGCCTCTAAACACGGCGGTGTCTCCTCGACACCGAATTCCTGGGCCTGGGATTCTGCCACCGTCTTAGTGTCTGGAGAGAGAGAGGTGGTGGGGATAAGGAAAATTGGAAAGGGGAGAGAGTTGTTGATCTGAAAGGAGAGCCTGCGAGGAAATGGACGGCCTCGGGTGTCGAGGAAAACTCGCCCAAGCGAGGCAGGAAGGAGACTTTGTCCTAACCGAGTGGTGCCTGAAAGGCAAGTGCAAACGGCCACAGTGTGGGCCGCTTCTGAGGAAACCGCCAAGGGTCGGACCGGGCCTCCAGGCTCCCGCCCTCTGGCACCTGCTCGCTGTGCGGGCGCCAGGCAGGCAGCCTTTCCCGGAGCCCGGGTTTGTTGACGTCGTTCACAAAGAACGAAATTTCACACGTGTGCCTGCCGTTTTCTTTCTGCCTCGCTGTCCTCCCACCTGTCTTTCCTTGCAG
Seq C2 exon
CCAGGGCCTGGTGTCAGGTGGCCCAGAAGTTCACGGGCGGCATCGGAAACAAACTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008056:ENSBTAT00000010598:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development