RnoINT0063565 @ rn6
Intron Retention
Gene
ENSRNOG00000018200 | Gad2
Description
glutamate decarboxylase 2 [Source:RGD Symbol;Acc:2653]
Coordinates
chr17:89171250-89172470:+
Coord C1 exon
chr17:89171250-89171724
Coord A exon
chr17:89171725-89172410
Coord C2 exon
chr17:89172411-89172470
Length
686 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCCCTGCCTGGCGATTGCAGCGA
3' ss Score
6.48
Exon sequences
Seq C1 exon
CTCGCACCTCACGACCCAGCTCCTCCATTTCCCTTTCGTCACTCTCTGGTCTCCCCACCAAACTCCTCTCCCTAAAAATTCTCTTGGGTCCTTTCCACTTTCCAATCTCCAGACTGCGAGGATCAGGCTACTCCCCCATTTAACCACCGCGCAGAGCACAACGGCTCGTCCCTACGCCCTGACTCGAACACTCACACGTACGAGCACTGGCATACGCAGACAGCACGTTTCCTGTCCCTGTGTGACACCCACCCTCGTCGCGCGGCTGCTCCAGCCCTCGCGCGGTGCCCTCCTCCCGCCACACACACTCGCACACGCACGCAGGCGCGTGCAGGGTCGAGCCGAAGGCAGCTTGCCCGCAGCCACTCGGAGGCGACCAGCGCCAGACTAGCAGAACCCATGGCATCTCCGGGCTCTGGCTTTTGGTCCTTCGGATCTGAAGATGGCTCTGGGGATCCTGAGAACCCGGGAACAG
Seq A exon
GTAGGAAAACCAGAACCTGCAGCGGGAGAGCTTTGTGGATGGATTAGGGTTTGCCCGGCTACGCAGATGATCAAAGCTTTGACATCTGCAACAGGAAACTTATTCAGGCGCTTCGCCTGGCTCCCTGGGTTAAGTCCTTAACTGTGCGAGAACCCCAACCCCTCCCCTCAGCCCTTTGTCCCCCTGGGAAAAAGCCCAGGGTTGTCTCGGCCCCTTCCCCTAAACGTAGGTTCCTAAAAGACTGCTGCATCTGCTGTCATCGGAAACCTGAGCTTTGCTTAGGGACGTCTAGACCCCGGGCAGGGAAAGGCAATCTAGGAACCGGGTAGAGTTTAGGGTCTGAAAGGCAAGCGCGGCGAGAAACAAACATCCTCGGGTCTAGGAAAGCCAGCCCCGGCGCGAACAGGGAGGGTCTGGAAACCCGAGGACCTGGCGAAGAAGTGCAAAGGGCCGCGGTGTGGACTGCTTTCTTTCTGGGACACGACAAGATGAGGGCTGGTCCCGGCGCCAGGTTCCCTCGGGCTCCCCCACCTGCTGAAGGCAGAGTCGCTAGCCCGTGGCCGCTCTCGAGGTTGGCGCCGGGTCCCCAGACTCCGGACTCGGAGACCTGGTTCACTTAGAACGAAATTTCTCACTCCCCCGTCTGTTCTCTTTCCGATTCGCTTTTCCCTGCCTGGCGATTGCAG
Seq C2 exon
CGAGAGCCTGGTGCCAGGTGGCCCAAAAGTTCACGGGCGGCATCGGAAACAAGCTATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018200:ENSRNOT00000024901:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACTCGAACACTCACACG
R:
CGCATAGCTTGTTTCCGATGC
Band lengths:
358-1044
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]