GgaINT0050755 @ galGal3
Intron Retention
Gene
ENSGALG00000009589 | Q9YI58_CHICK
Description
NA
Coordinates
chr7:19683595-19686053:-
Coord C1 exon
chr7:19685904-19686053
Coord A exon
chr7:19683658-19685903
Coord C2 exon
chr7:19683595-19683657
Length
2246 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
GCCTCTGCCCTCTCTTGCAGCCT
3' ss Score
12.11
Exon sequences
Seq C1 exon
TAAATTCCTCGCTGCCCACTCGCCCTCGGAGGAATATCGAAGGAAAGGCGAACTCCGAGCGCTGGGGCTCTTTTGAAGGGATGGCTTCCTCCGCTCCCTCGTCCTCCAACGACGCTCCGGACCCCGCCCCGACCAATTTACGACCCACAA
Seq A exon
GTAGGTTTTATTATTTTCCTCGTTTACAGCGTTTCGGAGGCTCTCTCCGCTCGGGCTCGGGAAGCCCCGTTTCCAAACGAAACGATCGATCGGTGCCGCCCGTTCCGCGCCGCCAGACAAGGTGCGCAAAGTGCTCACACAAAGGAACCGCCTCCCGGAGGCAGCGGGGTCCGTGCGGCGGGGAGAGCCCCCCGCAGCCCTTCTCTGACCGCCTTGCGGCAACGTCTGACGGATGTGGGCGCTGAGCTGAACCGCGGGCGGCCGAAAAATGGGGATGTTGTCGGGGCGGGGAGAAAACGAATCTGTGAAGGGGCGAAGTTACAGCGGTGGCTCAAAGCGGGTCCTTCCCCCCCCCGCGCGTTTTATAAATGCTAATGCTAGCGCTTCCTTTCAACCCGCGCTGAAGCCTATAATCAAGCGAAATTGGGATGCTAATTGCAGCTTTTCAAAGCCTTGTATTCCTAATTGCTCTGAATTCGCCTTGAGTTATTGAGGTGCGAGTGCGAAGCGGAGGCTGCTGCAGGTGGATGTGAGATCAGCTGACGGCCCTGCCGGCTGCCAAAATGCTGAAACAAACGAACGGCTCGGTGCTATAAAGCGCCACAGACAAAGAGCGGGCGGCAGGAAGAAACGAAAGGTTGAGAGGCACAGCAAAGAGGGAACCGCTTTTACCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAGAGCTAGATAAATAGCTTTGGGGGGGAACCAGCTTTCTCCCGGTTCGATGGGCCGGTGACATGAAGAAACAAAAGGTTCAGAGAATTTGCAGAGAGAGTAGGTTTTTTACTCCAAAGGGTGTTAGCCAACCTTAAACCTGGCCGTGATTGGATCAAGGGGTGTGGGAGGGATAGCCAGTAAAGGATCCCCCAGCTAAGGTGAAGTTTCTCTTGAGGGATAGTGCAAGGTTAGCCCCGCCACAGAAAATAAGTTGGGGAGGCATCCTACAAAGGGCCCGGCAGCGCTCCCCGCTGCTCACCTCTCCCCGAGCCCGGCCCCGGCCCGCTCTCTTCCCTCCCGCGGGGGTCCGCCATGTCTGCGGCCGTCCCACCGCCCGTGGAGGCGATGCGGGATCGAGCGTAGAGCGGCGGGTCCGCGCCCCTCTGCCTCGCCCCAGCCACAGTCTCACGGCTCCGCCGCCGGCGTGGAGGGGGCGGTCTCCGCGGCTCGGCTGTGTACGGGCCGAAGCGGGCGCTCCTTCCACCTCAGTCCGGGCCCGTGACGGGAGCCCCGCCGCCCCCCTCTCCCTGTCTCGGCGGGGCACGGCCGGGGCGCGTTTCGCATTGCCGGGGAAGAATTCGTTCCCGTCGGGGCGGCCGCGCTGCACCACGCAAGAGCCGGCCTCGCCGCTCGGCGGCGTTTCCCGGGGCGCTTAGGGCCGTGCAGCCGATGGGTCCGGCCCGGCTGAACCGCCGCGGGCGACGGGCGTCGGGCACGGCCGGGACGGAGCGTCCCTGGTGCGGCTACCGGCGGCCCGACAGAGCGGCCCCCGCCCAGCCAGCCACGTCCTTTCATCGAGTCGAATACTATTATTCACCCAATTAATTCCTGAACTCGTCTGTGACCCCATTTCACGCCACTTTATTTTAAGCTGCCGCTTCCCTGGAGCCCCGCCAGTGCATTATGGGATGCTCCGGCCCCAGGTGCCGTTCTCGCTTCCCGGCGCTGTCGCCGGGGGGACGAGGAGTCCCGGCTACCCGCCGAAAGGGGGGGGGGAGGGAACGAGATGGGGAAACGCAGGGCCCGGCCGGGGTCCCACTGGGGTCCCGCCGTGCCAAGGAACGCCTCTGCCCTCTCTTGCAG
Seq C2 exon
CCTACGACTCGTGGTGCGGCGTGGCGCACGGATGCACCAGGAAGATCGGCCTGAAGATATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009589:ENSGALT00000015628:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]