RnoINT0063557 @ rn6
Intron Retention
Gene
ENSRNOG00000000007 | Gad1
Description
glutamate decarboxylase 1 [Source:RGD Symbol;Acc:2652]
Coordinates
chr3:56862989-56866423:+
Coord C1 exon
chr3:56862989-56863131
Coord A exon
chr3:56863132-56866360
Coord C2 exon
chr3:56866361-56866423
Length
3229 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
CTCTGTCTCTCTGCTCCTAGCAT
3' ss Score
8.64
Exon sequences
Seq C1 exon
CCCGTTCCTGCGCCCAGACCGCGGGGGACACTTGAACAGTAGAGACCCCAAGACCACCGAGCTGATGGCATCTTCCACGCCTTCGCCTGCAACCTCCTCGAACGCGGGAGCGGATCCTAATACTACCAACCTGCGTCCTACAA
Seq A exon
GTAGGTCCTGCCCCAGTTTCCTATTAAATGGACTGCAGCGAGGGTGGGGGCGCTGGCACTGCGGGAAGCTGCGCTGTCGGAACGCGAAAGGAGAGCGTAGAAATGATGGAGGCTGGGAAACAAATGGGGCCCTATCCCAGGTTCCTGCTTAGAGGTCATTTGGCTGCCAGGGACGCGAGGTTACTCTCAGGGCACCTAAGAGCTAGGACTTCACACGGGGCCCCGGCAAGAAAGATCATGGGGTCTTAGCGGGTAGAGACGTGCAAGGCGCTCTGTTGTGGTTTCGTCTGACGGGACAACAGGGGTCAGAGCAGAGGGGCAGTGTGAGAAACCTGGAGTTTCCGCGAGAACAGTTTTCTAGTTCTAGGTTTGGGATGAGACCTGACCTCCTCCTCTCCTCTCCCCCACCCCCCGCCCCCAGTGCTGTATTCACAGTCCATAATCAGGGGAAATTTCGACGTTAATTGCAGCTTTTAGAAAACTCTGGGTCCCTAATTGCTCCAAATTTGCGTCTAGCTATTGACGAGTGAGGGCGAAGCCAGGAGCATAAAAGGTGCACAAAACTGCCTGCGATTTAATTAATTACATCTTAGAGACAAGACAAAAAAAAAAAAAGGCTAGGGAGGGGCATTAGGCATCATCCGGAGTGGCAAGATGTGTGTGGAATGGGGAGGGCTGCTAACTAGGAGGAGAAACGGCTTGGCAAGCCAGGAGGCAAAAACACCCCTGTGCTTTTTTTCTAGAGACCTGTCAGCAGGTGACAAGTCTTGGAGTATAGGGAAACCAGATAAAAGGGCATTTATGTTTCCCTACCCAATCTGTCTCTAATTCAGCCTGACTTTCTAGTTCCTGGAGTCGCGGGATTTGTTTATCTTTTTTTCCATGTTGGGGTTAAGTCTTTCACCACCCCTCTCCCAAAAATTTATCAGCTCCAGATAGCTCCGGCCCCCCAGAATCTCTACAGAAGTAGAGCTGAGGGAGATCGGTGTGGTCGAGTGTGCTTTTTTGTTGCGTTTTTATGGCACTCATTGTAAACCCTGTGAAAACAATTGTTCCCATCAACAAAAGTGGCAAGAAGGCAAGGAAAGCTCTCCTTCAATTTCTGAGTGCAGACGTTGAGGCCGGAGGCCCTAGTTCCTCAGGCCACCTTGCAGTTCTCTTCTTAGCAGCCCCAGCTTCCTGCACACAGGCAAGCGACAGTTACCCACACAACAAAGCAGAGCTCCGGAGAGTGCCCGGGGCACGTGATCGGGCATTGGCGGCGGAGCCAACGGTGGGAGCTGGCCCCGCAGAACTCGAGGCCTGCGCCCCTTTTGTCTGTAGATTGGATCTGGATAGATTTATTTTCCAGTCGTCCCCACATCTTACTCCAGTCTTTATCCCCCAACACACACTGTTATTCCTTCTGCAAGGTTGGGGGCCACCCTCCACACTAGGCACCCGTAATATCCTACCAGGTTACCCCGTAGTCCTCAAATGTCCAGCCTCAGCAAAGGCCGAGGCGATGATCTGAGTCCTTCCAAGGTGTGGTGCCTCCGGAACCTACCTAAATGGAGGCCAGAGATCTAAGGATCCGCTGCCTGGGGAAGAACCGGTCCCTGGGAACCTATAACAGTTAAATGGAGAGCCTGGGAGCGCTTGTCCGCGCTGTCCAATTTCCATCGGTCCTGGAAGACACACCCCCACCCGCCCAGTTTGCTGTTGAGCTCTGCCTCCGCGAGGTCTCCGGGAAGGCGCCCCTTTCTGCTCCGTTACACACCTTATACACCTTATTCAATCACACCTTATTCCTGACAAGCAGGAGCTCTCCAGCCTATCGCCTATCAGAAAAGGCATTCTCAACTCGGGCCACAATAAAGGGGGCTCTCGGCCCCCTCTCTCTTTCTTCTTGTTTTTTTAATTAACGCCTAAGTTGGGGCGAGGGATGGTGGCACTGGAATATTTCTGAACGCCAACCTCAGGCCAAGTGACCTTGGGAAACTGTAGCCTCTACGCTGAAATGATTTTGTCTCCTGAGTCTTAGACCTACACTCCTTTCCTGGGTTCTTGTGGTGATGATATGAGATTGGAGTTTAAAGAGAAAGCACCGACATTGGGTGGAAGGACCGCCTTATACTCTAGGTACTGCCATTAGAGGGTCGCTATTGTACAGATTTCCTGTCTGTCCGTGGAATTCCAACCGTGACACACTGTCTCACGACGTCAGGCGGGTTCTTCGCCCCTCTGGGGCTCTGTTGTGCCTGAGGTTTAATGGATGTTGCCCTGCTTATCGCTGTCAACACTCCCGCACCGCTAGGGTGGAGGATGGGAGACGCCTGGCTTGGAGGGGTGGGGAGGGATTTCTGCTAGGCCCATTCCGGGAGTCTACAAGAAGGCGTCTCTAGACAGTATAGGCTGCCTCGCTGCATTCTTTGCTGGGAGTTAACGCGAAAGATCGGTAGACCAGAACGCCTTCAGAATGGCCTGGGAGGAGAGAGAAAAAAAAAAAGCCAAGTCCTTCGGCCACGCGTTTCAAACCCAGAGGAAAGGTGCTTGCACCAGCGTGCTTCAGACTCTAGAAGTCAGAAGGAAGGGTTAATGAGGGGCAGGTTGAGAAGGGGGTTGGGGTGTGGGCTGAGGACCGGACCGCTGGCGCACCATTGTCTTTTTGCTTCCCGGGTCTAACTGGAGCAGCCATGCGAGTCCGATCATCTACTCAAATACTATTTTTCACCCAATTAATTCTTGAACTCTTCCGCGACCCCATTTCATGCCAGTTTATTTTAAGCTGCCACTCGGCTGGAGACCCGCCAAGAAATTATGAGACGTTTGGGTCCCAGATGCCTCTGTGTTCCCCATCTGAGCGGTTGTGTTGTCGCCCTTCAAGTCCGAGGACTGGGGCCTGGGGCTGGGCCCGGCGGGTGGGTGCTGGGCCGTGCCAGAACTAAGGTCTGGATCTTTGTGCGTTTGATTGGCCTCTGCCTTGTTGGGGATCGCTTGGGGGCGGGGCCCGTGGCTGTGAGCCCCAGTTCAACAAAACATGGTTCGGTACCTGAAGGCAGGAAATGTGAGGAGAGCTGGGAGCTCTGTCTGAACCAAAGATGTAGGTAGCTCCTTGCTCCTTCTAGAGCAGAGCTTTTTATGTGGCTTTTCAGGAAGACCTCCACAGTCCTCGTGAAAACCTTTGCCCTCTACCCAGTTTCTCATGGCCCAACCTTCGCTAATTTGCCCTCTGTCTCTCTGCTCCTAG
Seq C2 exon
CATATGATACTTGGTGTGGCGTAGCCCATGGATGCACCAGAAAACTGGGCCTGAAGATCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000007:ENSRNOT00000000008:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]