GgaINT0050755 @ galGal4
Intron Retention
Gene
ENSGALG00000009589 | GAD67
Description
glutamate decarboxylase 1 [Source:RefSeq peptide;Acc:NP_990244]
Coordinates
chr7:17721601-17723499:-
Coord C1 exon
chr7:17723350-17723499
Coord A exon
chr7:17721664-17723349
Coord C2 exon
chr7:17721601-17721663
Length
1686 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
GCCTCTGCCCTCTCTTGCAGCCT
3' ss Score
12.11
Exon sequences
Seq C1 exon
TAAATTCCTCGCTGCCCACTCGCCCTCGGAGGAATATCGAAGGAAAGGCGAACTCCGAGCGCTGGGGCTCTTTTGAAGGGATGGCTTCCTCCGCTCCCTCGTCCTCCAACGACGCTCCGGACCCCGCCCCGACCAATTTACGACCCACAA
Seq A exon
GTAGGTTTTATTATTTTCCTCGTTTACAGCGTTTCGGAGGCTCTCTCCGCTCGGGCTCGGGAAGCCCCGTTTCCAAACGAAACGATCGATCGGTGCCGCCCGTTCCGCGCCGCCAGACAAGGTGCGCAAAGTGCTCACACAAAGGAACCGCCTCCCGGAGGCAGCGGGGTCCGTGCGGCGGGGAGAGCCCCCCGCAGCCCTTCTCTGACCGCCTTGCGGCAACGTCTGACGGATGTGGGCGCTGAGCTGAACCGCGGGCGGCCGAAAAATGGGGATGTTGTCGGGGCGGGGAGAAAACGAATCTGTGAAGGGGCGAAGTTACAGCGGTGGCTCAAAGCGGGTCCTTCCCCCCCCGCGCGTTTTATAAATGCTAATGCTAGCGCTTCCTTTCAACCCGCGCTGAAGCCTATAATCAAGCGAAATTGGGATGCTAATTGCAGCTTTTCAAAGCCTTGTATTCCTAATTGCTCTGAATTCGCCTTGAGTTATTGAGGTGCGAGTGCGAAGCGGAGGCTGCTGCAGGTGGATGTGAGATCAGCTGACGGCCCTGCCGGCTGCCAAAATGCTGAAACAAACGAACGGCTCGGTGCTATAAAGCGCCACAGACAAAGAGCGGGCGGCAGGAAGAAACGAAAGGTTGAGAGGCACAGCAGAGAGGGAACCGCTTTTACCCTGGAAGGGCTGTCGGGGCGATGAGCCATGGCTGTCATTGTCCCGCGGTCGGGGGGAGGGGACGAGCGTCGAGGCTGCCTCCACCGGGGTGAAGGGCTGCGCGGAGGGACAGCGCAAGAACCGCGCCGCCCGGCCCGGCCCCGTCGGGAGGGTTCCTCTGCCGGGCCCGGCAGCGCTCCCCGCTGCTCACCTCTCCCCGAGCCCGGCCCCGGCCCGCTCTCTTCCCTCCCGCGGGGGTCCGCCATGTCTGCGGCCGTCCCACCGCCCGTGGAGGCGATGCGGGATCGAGCGTAGAGCGGCGGGTCCGCGCCCCTCTGCCTCGCCCCAGCCACAGTCTCACGGCTCCGCCGCCGGCGTGGAGGGGGCGGTCTCCGCGGCTCGGCTGTGTACGGGCCGAAGCGGGCGCTCCTTCCACCTCAGTCCGGGCCCGTGACGGGAGCCCCGCCGCCCCCCTCTCCCTGTCTCGGCGGGGCACGGCCGGGGCGCGTTTCGCATTGCCGGGGAAGAATTCGTTCCCGTCGGGGCGGCCGCGCTGCACCACGCAAGAGCCGGCCTCGCCGCTCGGCGGCGTTTCCCGGGGCGCTTAGGGCCGTGCAGCCGATGGGTCCGGCCCGGCTGAACCGCCGCGGGCGACGGGCGTCGGGCACGGCCGGGACGGAGCGTCCCTGGTGCGGCTACCGGCGGCCCGACAGAGCGGCCCCCGCCCAGCCAGCCACGTCCTTTCATCGAGTCGAATACTATTATTCACCCAATTAATTCCTGAACTCGTCTGTGACCCCATTTCACGCCACTTTATTTTAAGCTGCCGCTTCCCTGGAGCCCCGCCAGTGCATTATGGGATGCTCCGGCCCCAGGTGCCGTTCTCGCTTCCCGGCGCTGTCGCCGGGGGGACGAGGAGTCCCGGCTACCCGCCGAAAGGGGGGGGGGAGGGAACGAGATGGGGAAACGCAGGGCCCGGCCGGGGTCCCACTGGGGTCCCGCCGTGCCAAGGAACGCCTCTGCCCTCTCTTGCAG
Seq C2 exon
CCTACGACTCGTGGTGCGGCGTGGCGCACGGATGCACCAGGAAGATCGGCCTGAAGATATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009589:ENSGALT00000043162:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATTCCTCGCTGCCCACTC
R:
CGCATATCTTCAGGCCGATCT
Band lengths:
213-1899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]