BtaINT0065018 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007258 | GAD1
Description
Bos taurus glutamate decarboxylase 1 (brain, 67kDa) (GAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075756]
Coordinates
chr2:25680733-25684185:-
Coord C1 exon
chr2:25684041-25684185
Coord A exon
chr2:25680796-25684040
Coord C2 exon
chr2:25680733-25680795
Length
3245 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
GCACGTCTCTTGCTTTCTAGCGT
3' ss Score
7.96
Exon sequences
Seq C1 exon
CCTTTTCTAGTGCCCGACCGGCCGAGGACCCCGGACAGCAGAGGCCTCGGGACGACCGAGCTGATGGCGTCTTCGACCCCTTCTTCGTCCGCAACCTCCTCGAACGCGGGAGCGGACCCCAATACTACCAACCTGCGCCCCACAA
Seq A exon
GTAGGTCCTGCTCTAGTTTCCTATCAAATGATGGGGGCGCTGGACCTGAGGAGTCTGCGCTGGCGTAAAGGGAAGGGGGAGCGCGGAGATGATGGAGGCTAGAAAGAAATGGGGCCCTGACCCAGGTCTCAACCAGAGGTCGTTCGACTGCCAGGGATGCTAGGTGATTCCAGGGCGCTAAGAGAGTGGGAACCACACAGGGTCGGAGCGGCGGCGATCTTTCGCTACGGGTGAAGGACGCGCGGTGAGTGTTGTGTTGTGTTGTGTTGTGTGTGGTTTCTTTGCTAGGTGAGACGACCGGGGTCGGTGCACGGGGAGATGTGAGGAGCTGGGAGACTCAGCGGGAATAGAGTTTTCTATCTCCAGATTTCGTTGAGCCGAGATCTGACCCCTCCCCCTCCGTCTTTCCCCCTGGAAGTCTATAATCAGCGGAAATTTCGACGTTAATTGCAGCTTTTAGAAAACTCGGGGTCCCTAATTGCTCCAAATTTGCGTCGAGCTATTGACGAGTGAGGGAGAAGCCAGTGGCGAAAAAGGAGCATAAAACGTTCTGAGATTAAGCCTCTACATTTTAGACAATTAATTACATTTCAAAGACCAAAAAAAAAAAAAAAAAAGTGGGCCACATTCTGAGTGGCAAGAAGTGGGGAACAAGGAGGAGCCCAGAAGGTTTGCCAGGGAAGAAGGACAGAGCAGCCCTCTCTTTTTTCCGGGCCAGGAGACCTGTCAGCAGTGGACACCTCCCAAAGAGTGAAAGGGGGAACGAGATAAAAGGTGGTGGGAAGATTTATGTTTCCCCATCCCTAGCTCGGCGTGGCTCTTCAACCCATTTGTAGAATCTGGGCATAATTCGGATTGATTTCCTACCTCTTTGTAGAGGTGGGAAGATGGAGAAATTGTTTTCCGTTTTCCACTTTAGATTGAAATGGTCTCCCTCCAAATCTATCAGCTCCAGAGAGTAAGGGCCCCAAAATTTTTGTATAAAAAGGGGGCTTAAGGGTGGTACTGTGATTGGAAAGAGGGCTCATTGCTTCGCTTTTATGGCACTTTCTATAAGCTTGAGAAAACATCAATTGTTCTCAACAAGGAAGGTTGGCAGGGGGCGGAGGAGGGAGTGGTCAGGTAAGCCCTTTATCCTACCCATAGGTGCTGCCCTTGGCTTCTTGGCAGAAGACCTCCTCTTAAATTTTTAGACTGCTTTCCAGTTCCCTTTGCAGCTCCGATGCCCCACCCCCAGGGAAGCTACAATTACCCACACAATAAAGAGAGACTCAAGAGAGCCGCCAGCCTTGGTGGCTCATGAGCTGCACACTGGCCACCAGAGCTGCTCGGAGGCCTGAGTGCCTTTGTCTGTTGCTGAGGCACAGATGGATTTCTTTTCCAGTTCTCTCCACATTTCCCGCCCCTTTTCTGCTGCCTTGGCAAGGGTGGGTATCCATAGTGTTCATCCACCCTCGAGTCCTGCACCCCCATCACGCCCCTACTTCCCAGAGGCAGCCCCCAGTGGAGCCCATGTGCCCAAACCTAGGTCCAGACCCAGTAGAGGCACTGACCTGAATTCATTTGTGGCCTGGAGGTCGCGCCCGGAATTCGCCAAGGCAGAGGGAAGATCCTGAAACACAGGTTCTGAGAAGCACCTGTCTTGTTTCCCGCCCCAACAGCCCAGCTGCGGTGAGCATCCCAGGCTGCACTCACTCACCTGGCTCTCTACCCACTCTTGCCTGCCCAGCTGGCTCCGCTTCTCTGCCCCTCCAAGGTCTCCTGGGAAGTGGCTTTGCTTAATTCACACAATTTTACACAACCTCTTACTGCAGCGACCCCGCCTCTTTGCCCTAGACCACTCAGTCTTCCCTACATCAAAGGGGCTCTCTCACTTCCTCTTCCCATCTCACTCCCTTTCTTTCACTGTAATCCCCAACTCTAAAAGGCAGTGCAATGGGTCTGAACTCCAAGCCATAGCTGAGTGACCTTGGAAAACTCTCCTCACCTCTCTGAGCCTCACTGTTATTATTTGTGAAAATGAGTCTTAGATTAACACTCCTCTTGCTTTATAAGATTATGAGGATTAGGTGGGATGAAAGCAGTTTACAGTGAAAGCACTGCACCGGGTGGAAATAGCACTTTACCTTAAAGGTGCTGTTACTGGGGTTTAGCTTTCGCACTGATTTACTGTCTGTTGCAGGAACTCCATCTGTGACACGCTGTCTCTCTGACACGCTGTCTCTCTGACGTTGGGCTAGTTCCTCTCCCCGCTGAGGCTCTGTTGTGCCTCGGGTTTAATGGATGTCATTCTCCTTATCGCAGCCAACATTCGTGCGGGGCTGAAGGCACCGGCCAGGATGGGGTGGGGGATGGGAGGGACTAGAGACGCCTTGCTATGAGGAATCTGAGAATTTCTCGCTAGGCCCACCACACCAGGTCGCACGCGGGCTCCTCAGGCACCCCTGCACTCCTAGATGGAAGTTGAATCCTGAAGGCAGGCTAGACACTGAGGAGTCTGAGAATACGGCAGCTCCTGAGTCCCCGATTTAGACCTCGAGAAAAAGTGTCTGATTCCCTTTACTTCTAGAGATGCCGGAGGGAAGGGTTAATGAGGGGCAGGTTAGGAAGAGGGGGCAGGGATGAAGACCCCAGGCGCACTATTGTCTTACTGACTCCCCAGTCCCACTGAAGAGCAGCCAAGCGAGCCCGATCATCTAGTCAAATACTATTTTTCACCCAATTAATTCCTGAACTCTTCCGCGACCCCATTTCATGCCAGTTTATTTTAAGCTGCCACTCGGCTGGAGACCCGCCAAGAAATTATGAGACGCGTTGGTCCCAGATGTCTCTTGTGTTCCCTTTCCTGGCTGCTGTGGTCGCCCTTCGGGCAGAGACCAAGGGACAGGGCCTGCGGGTGGGTGCTGGCCAACTGAGGAGCCAGCCCTGTCCCACTCCGCGACCCCTCGGCGGCCACCCGACTTGAATGGCTGGGGTCGCTTGGAGGCCCAGCAGAGCGCGGGGCGCGCGGCCTCTCAGAGACACTGTTCCCTATCTGAAGTAGAATCGGAAAGGGACTGTGGTGGGTTCTCTGAGGGCACGAGTCTCCCTGTCAGCCCAAAGGTCAGACTCAGCTCGTTGGGGAAAGAGCTATTTAATGAGGCGCACTGGCAAAGACTTGCCCCCACCCTCCCCAGAACACCTTTGCCTTCGAGCGGGTCCCAGACTGTCCGAGCCTCACTGAACGCACGTCTCTTGCTTTCTAG
Seq C2 exon
CGTATGACACCTGGTGCGGCGTGGCCCATGGATGCACCAGAAAACTGGGGCTGAAGATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007258:ENSBTAT00000009547:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]