MmuINT0067119 @ mm10
Intron Retention
Gene
ENSMUSG00000070880 | Gad1
Description
glutamate decarboxylase 1 [Source:MGI Symbol;Acc:MGI:95632]
Coordinates
chr2:70563768-70567248:+
Coord C1 exon
chr2:70563768-70563910
Coord A exon
chr2:70563911-70567185
Coord C2 exon
chr2:70567186-70567248
Length
3275 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
CTCTCTCTCTCTGCTCCTAGCGT
3' ss Score
10.43
Exon sequences
Seq C1 exon
CCTGTTCCTGCGCCCAGTCTGCGGGGGACCCTTGAACCGTAGAGACCCCAAGACCACCGAGCTGATGGCATCTTCCACTCCTTCGCCTGCAACCTCCTCGAACGCGGGAGCGGATCCTAATACTACCAACCTGCGCCCTACAA
Seq A exon
GTAGGTCCTGCCCCAGTTTCCTATTAAATGGACTGCAGCGAGGGTGGGGGCGCTGGCACTGCGGGAGGCTGCGCTGTCGGAACGCGAAAGGAGAGCGTAGAAATGATGGAGGCTGAGAAACAAATGGGGCCCTATTCCAGGTTCCTGCTTAGAGGTCATTTGGCTGCCAGGGACGCGAGGTTACTCCCAGGGCACCGAAGAGCAGCGAGGACTTCACAAGGGCCGGGCAAGAAAGATCTTTGGGGTCTAAGGGGCAGAGACGTTCAAGGAGCTGTGTTGTGTTTTTGTGTCTGGCGGGACAACAGGGGTCAGAACAGAGGGGTAGTGTGAGGAACCCGGAGTCTCAGCGAGAACAGTTTCCTAGCTCTAGGTTTGAGATGAAACCTGACCTCCTCCTCTCCTTTCCTCCACCCCCCCCCGCCCCCAGCGCTGTACTCACAGTCCATAATCAGGGGAAATTTCGACGTTAATTGCAGCTTTTAGAAAACTCTGGGTCCCTAATTGCTCCAAATTTGCGTCTAGCTATTGACGAGTGAGGGCGAAGCCAGGGGCGTAAAAGGTGCACAAAACTGCCTGAGATTCAATTAATTACATCTTAGAGACAAAAAAAAAAGGCGAGGGAGGGGCATTTAAGCATCATCCAGAGTGACGGGGGGGGGGGCACCTTGGCAGCTAACTAGGAGGAGATGTGGCTTGGCAAGCCAGGAGGCAGAAGCACCCCTGTGCTTTTTTCTAGAGACCTGTCAGCAGGTGACAAGTCTTGGGGAGAATAGAGAAACCAGATAAAAGGGCATTTATGCTTCCCCATCCGATCTGTCTCTAATTCAGCCTGACTTTCTAACTCCACATAGAGGACTGGAGTCGTGGGATTTATCTTTTTTCCATGTTGGGGTTAAGTCTTTCACCACCCCTCTCCCAAAATTCTATCAGCTCCAGACAGCTCTGCGCCCCCTACCACCAGAATCTCTACAGAAGAGGAGCTGCGGGAGATCTGTGTGGTTGAGAGTGCTTTATTGTTGGCGTCTTTATGGCACTTATTGTAAGCCCCGTGAAAACAACAGTTCCCGTGTACACAAGTGGCAAGCTGAAGGCAGGAAACCCCCCTTTGAATTTCTTGGTGCAGACTCTGAGGCAGGAGACCCTAAGTCCTCAGGCCACCTTGCAGTTCTCTTAGCAGCCCCCCCCCCCTTCCTGCACACAGGCAAGCGACAATTGCCCACACAACAAAGCAGATCCCAGGCAGAGTCGTCAGTGCCGGTGGCACGTGATCCAGGCCTTGGCGGTGGAGTCAGCAGTGGGAGCTGGCCTGGCCGAACTCGAGGCCTGCGCCCCTTTTGTCTGTAGATTGAACCCTGATAGATTTATTTTCCAGTCCTCCCCACATCTTACTCCAGTCTTTATCCCCCAACACACACCGTTATTCCTTCTGCAAGGTTGGGGACCACCCTCCACACTAGGCACCTCTACATCCTAGCAGACTACCCCATAGTTCTCAAATGCCCAGCCTCAGCAAAGGCCAAGTCGATAATCTGAGTCCATACAAGGTGTGGTACCTCCGGAAACCACCTAAATGGAGGCCAGAGATCTAAGGACACCCCACCTCCACCTCCCTTCCCTGGGAACCCCTAACCCTTAACTGGAGAAAGCCTGAGAGAGCTTGCCTGCTCTGTCTAATTTCTGTCCTCCCTGGAAGACACACCCCCACCCGCCCAGTTTGCTGTTGGGCTCTGCCTCTGCAGGGTCTACCGGAAGGCGTCCCTTTCTGCTCCAGTATACACCTTACACACCTTGTACCCTCACACCTTATCCCAGCAACCCCCTGGCAAGCAGGAGCCCTCCTGCCTATCGCCTATGGGGGGGGGGGAAGCATTCTTAACTCCGGCTACAACAAAGGGGTTCTCGACCCCCATCTCTCTTCCTACCTGTTTTTTATTAACACCTAACTTGGGGCGTGGGGGACGGCACTGGAATATTTCTGAACACCAACCTCAGGCCAAGTGACCTTGAGAAATTGTAGCCTCTGGGCTGAAATGATTTTGTCACCTGAGTCTTAGACCTACAACACTTTCCTGGGTTCTTCTGGTGATTAGATGAGATTGTAGTTTAAAGAGAAAGCACAGATACTGGGTGGAAGTAGCGCTTTATGCTCCAGGTACTATTATTAGGGGCTTGGTGTTGCACAGATTTCCTGTCTGTCACTGGAATTCCTACCGTGACATACTGTCTCACGACGTCAGGCTGGTTCTTCGCCTCTCTGGGGCTCTGTTGTGCCTGAGGTTTAATGGATGTCACTTTGCTTATCGCAGCTAACACTCCCACACCGCTGGGGTGGAGGATGGGAGGCGCCTTGCTTGGAGGGATAGGAAGGGGATTTCTCCTAGCGCCCATCTCAGGAGTCTGCGGGAAGGCTTCTCCCTCTTTGCATTCTTTGCTGGGAGTTAACGCGAAAGACCCTTAGACCAGAACGCCTTGAGACTGGCCTGGGAGAAAGGGCGGGGGGCGAGGGGCAAGTCCTGCCGCCCGGGTTTCAGACCTGGAGAAAGGTGCTCTCAACAGCGTGTTTCAGACTCTAGAAGTCGGGAGGAAGGGTTAACGAGGGGCAGGTTGCGAAGGGGGGTGGGGTGGGGTTGAGGACAGGACTGGCTGGCGCACTATTGTCTTCTCGCCTCCCCAATCTGACTGGAGCAGCCATGCGAGTCCGATCATCTACTCAAATACTATTTTTCACCCAATTAATTCTTGAACTCTTCCGCGACCCCATTTCATGCCAGTTTATTTTAAGCTGCCACTCGGCTGGAGACCCGCCAAGAAATTATGAGACGTTTGGGTCCCAGATGCCTCTGTGTTCCCTATCTGAGCGGGTGTGTTGTCGCCCTTCAAGTCCGAGGCCTGGGACCCGGGGCTGGGCCCGGCGGGTGGGTGCTGGGTCACGCCAGTGCCAAGGTCTGGATCTTTGTGTGTTGAGTTTGCCTCTGCCTTGGTGGGGATCGCTTGGGGGCGGGGTCCGTGGCTGTGAGGCCCAGTTCTCCAAGACACGGTTTGGTTCCTGAAGTCAACAGTAGGCAGGAAACATGAGGAGAGCTGGGAGCTCTATCTGAGCCAAAGAAGTAGGGTAGCTCCTTGCTCCTTCCAGAACAGCTTTTTCCGTGCCTTTTCATGAAAACCTCCACAGTCCTCGCGAAAACCTTTGCCCTCTACCCAGTTTCTCATTGGTCCGACCAATCTGCTCTCTAATTTCCACCCCCCTGTCTCTCTCTCTCTCTCTCTGCTCCTAG
Seq C2 exon
CGTATGATACTTGGTGTGGCGTAGCCCATGGATGCACCAGAAAACTGGGCCTGAAGATCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070880:ENSMUST00000094934:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.858 A=NA C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types