BtaINT0065843 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030319 | GBGT1
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:20460]
Coordinates
chr11:103184860-103190121:-
Coord C1 exon
chr11:103190056-103190121
Coord A exon
chr11:103184908-103190055
Coord C2 exon
chr11:103184860-103184907
Length
5148 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TGTCTCGCCTCTCCCACCAGCAA
3' ss Score
8.52
Exon sequences
Seq C1 exon
GATGTATGTCGAGAACTGGCTGCTGGTCTCCTACATCCCCTATTATCTCCCCTGCCCAGAGATCTT
Seq A exon
GTAAGTATGGGGCAGGCAGACTTAGGGGCCCCCGGAATAGGGAAGATGGGAAGGCTTTTCAGGTCACTTTGTAGGTTCTTAGGTCCTAAACTCATGATTCTGAGCCACGAATGTGGAAGTTCCCTGTTTCCGTCTTCAGGTATCCTTGCAGTGCCCTCTCCACGGTGTGACTTTGAGCGTGTTGCATAGCTCAGAGCCTCACTTGCTGTATCTGTAAAATGGGAGGATAGGGTTTGGGGTGTGATGATGCCTGTAAATATCCTGGTGCTGCACCTGGTATATAGAAGGTGCTCAGGAAAGAATGATTTCAGGACTTGACCTTTTTGCTCAATGTTGTGCTCTCTGTGAATTCGAAGGACAAATGCACACGTGGCCAGTCTCCCTCAGATAACAGATCTGACATTTGGACAGTTCAGAGTGATAAAGATGATTTGGGACAGTCTCAATGTGGCATTTGGCCCCGTGGTCTTCTGGTTTTCATGACACCGAAAGGAAAGTTTAAAATCTGGATCATAGACGACTAATTAACAGTAAGGTGTGTTTCACTATTATAAACAGAATGTAGTAAATTAGGCAGGACAACAGAAAAGACAAAAGAAAACAAAAACCCTCTTGTGTCCAGGGGCATGAATCGCACTCTGATTCCATGGTCGGCTTGTTGATTGCTGCACTTTCTATTCAGATTGTTCTGAAAGCAGAAAGTACGCTTGCTGTTGGAAATAGCTGTGACCAGAATGTTTTTGCAGTTCTTATCGTATTTCCCCAGAATTGGCTGCATTTTTCAGCATCCGGTCACCGTCATTTTACTCCACCCAGGGGCTGGGCCCTAATTCTTAAACCATCTCCTTTTTCCACCAACAACTGTGGGGCATTTAGGTTGTTTCTGGTTTACCAGCTTCTAAGTTAGTTCGTAATGAGCAACTCTGGATATAAAGCGTTCTTCATCTTTTTTTTTAAATTAATTTATTTGCCTATGCTGGGTCTTAGTTGCAGCACGCAGGACCTCCCATCTTCGTCTCAGCATGCAGGATCTTTAGTTGTGGGTGGCACGTGTGATCTAGTTCCCTGACCAGGGACTGAATCCCAGGTCTCTGCTTTGGGAGCATGGAATATAAGCCACTGGGCCACCTGGGAAGTCCCAGCTTTTTCCATCTTAGAAATCCTTTTATTTGGTATGTTCCTGGGCCAAAGGATATGGCCAGGGTCTTCATCCATCTCATCAGGCTGCTCTCCAGGCTGCCTGCTTAGTCGCTTCAGCCATGTCCAACTCTTCATGACCCCATGGACTGCAGCCCGCCAGGCTCCTCTGCCCATGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTCCTCCAGGGGATCTTCCTGACCCTGAGTCAGAGTGATTCAGGCCAATAGGACATGAGGGGTTTTGTTTGGACCCAGGGATCCAACCTGCATCTCTTGCGTCTCCTGCGTTGGCAGGCGGGTTCTTTACCAAAACATGACCTGAAGCCCCTGGAAGCTCTCCAGGGGGACGCGGCAAACACAGATACACCTCCCCACCCTCCCCCACGGGGGACCGCGGCAAACACAGATACACCTCTCCACCCTGCCCCACGGGGGACCGCGGCAAACACAGATACACCTCCCCACCCTCCCCCACCCCAGCAGCTGCACTGCGCCTGGGCTGGGGCTGCAGGTATTCAGATCAGATCAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGAATCCCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTGAGACTCACGTCCATCGAGTCAGTGACGCCATCCAGCCATATCATCCTCTGTCGTCCCCTTCTCCTCTTGCCCCCAGTCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTCAGCATCATTCCCTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCAACACCACAGTTCAAAAGCATCAATTCTTTGGCACTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGGAAAACCACAGCCTTGACTAGACAAACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTTCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAGAAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGACATGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTATACTTTCATCAAGAGGCTCTTTAGTTCTTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGTTTCTTCCAGTCCAGCATTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACGTGCATACAAATTTCTCAAGAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGCTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCGGATGTTGGCAATTTGATTTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCACGGATCACATATTGCTGAAGCCTGGCTTAGAGAATTTTGAGCATTACTTTACTAGCGTGTGAGATGAGTGCAATTGTGAGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGTTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGGAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTTCGTAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTCAGTGATCACACCATCGTGATTATCTGGGTCGTGAAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCATCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATCGAGCCCATCTTTGCATGAAATGTTGCTTTGGTATCTGCAAGTATTAGGTGTCATGAAAAACAAAAACTAAACACCTTGCTGATTTGAGAGACGGGAAATGCACTGTGGTTTGAATTTCACTCCTTTGACCACGGCCCTCATCGCCCCACGCCTCCCCATTTACTGAATTTCCTCTCTGGTGACCTGCCTGCTCCACCACCTCCCCGCTTGGCCTGTTGGTGGGTCCTCTATCACCACCTTTGGCTGAAAGTACTCGGTGCTTTTTTTTTTCTAATTATTTGCAGTTTTTTAAAAATTATTTGCAGTCTGAGTTTTTTAAACAGATTACAGTTGGAGGTTTTTTGTTAGTTTTAAATGGTCACACCTTCCTCTCTGTTCATTTGGATTTCTTCTTTCAATGTTATTGCCTTCAGAGGTCTGGAAACATGAAGTTCCTGTTTTTATTTTGGCTCTGGCTCATCTGTGCTTTGGTGTTCTTATGTCTGACTCTTTAATGTGGCCAGAGCAGAGCGTGTCGGGGCTGGTGAGGTGAAGGGAGACACCGATGGCCGGGAGTGTGGGACGAGGGCCCCTTTCCTCTTCTCACTTCTGACCAACTTCTCAGAGTCCCGTCACTTTCTGAGCAGGACCTGAAATGTGCTTGTTTGTATGAAACTGAGGCAGAGGGCCAAGTTGATGGATCAAGTTTAAAAAATATATCTTCCAGAGTATAGGCTAATCACTATAGGACAAATACTGTAGGGTTTCATTTGTAAGAGATCTCTAGTATAGAGAAATGGGACTTCCTGGTGGTTCAATGGTTGAGACTTCATACTCCCAATGCAGGGGGCACAGGTTTGATTCCAAGTCGGGCCACATGGCGTGGCCAAAATGAATAGAGATCTTATTGAAAAAAAAAAAAAAAACAGAAGATTTTTTTTACAGAGATGGAAGTAAGCATAATAGTTACCAAGGGTTGGGAGAAGGGATGGAGAGGCAGTATCTCAGGGAGAGAGTTTCAATTTGGGGACGATGAACAAGCTCTAGAGATGGGTGGAGGTGATGTTTGCACAGCACCGTGAGTGTACCTAATGCCCCGGAACTCTATGCTTTCGAATGGTTAAGGTGGTAAATCTTCGTCTTGTATATCTTACCACACACACAAAGCGTAGCCGGAGGCACCAGCACAGCTCCGGGAAGCTGAAGCCAGCCCACCGTGGGTGATAGAGTGAAGAGACCCGGGTGAGCGGCAGGCACCCTCCTCAGGTGGTCCGAGCCTCACAGGCAGCCTCAGGCCTCTGCTGGAAGTGGCTCTGACCGGCTCCCTGGGTCAGAGGAGCAGGCCTTTCCCGTCTCCAGGCCTCACTTCCACCCTGCGGAGTGACTCTGTCATTGTCCCCACTTTAAGGGAGAGGGGACAAAACCCCAAAGAGTGCGATGTCCAGCCCTGGGTCTCTCCAGCCGGAGGCGCCTCACCTGCAGCCTCGTCTGTCTGAGCTCCTGGGCTAGAAAGAGGCAGAACTGGGCTCACTTTGCAGCTTCTCAAAGCTTCTCCACGGTGCCCAGGCTCTTCCAGAGCCGAAAAAGACTGTAGAGACAAATGGCACCAGGTTGAATCACCGCCCTGCCACACGGGACCCTGGATGGATGGCCTCTGTAGGAGCCCAGCCCCCAGAGAGCGGGCAGAGCCATGGAGGAGGGGCCAGGGAGCCTGGGGGAGGGGGCGCCTGGCCCATGGGGGTGTTTTGTCCCCGCTTCATCCATCCCTGCTGAGCATCTCTACTAACGACACTGATGGCCCTGTCTCGCCTCTCCCACCAG
Seq C2 exon
CAACATGAAGCTTCAGTACGAGGAGGAGCCGTCCCAGCCCGTGGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030319:ENSBTAT00000042813:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(6.8=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development