BtaINT0067243 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020249 | GLT6D1
Description
glycosyltransferase 6 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23671]
Coordinates
chr11:103317236-103318898:-
Coord C1 exon
chr11:103318761-103318898
Coord A exon
chr11:103318088-103318760
Coord C2 exon
chr11:103317236-103318087
Length
673 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CTCTGCACTGTGTTTCGCAGGCT
3' ss Score
8.74
Exon sequences
Seq C1 exon
AGGACGCCCCGATGTGATCACGACCACGAGCTGGCTTGCTCCCGTTGTCTGGGAAGGCACTTTCAGCAGAAAGATGCTGGAAAAACACTACAGAAGGCAGAATTTCACAACGGGCTTGGCCGTCTTTGCTACTGGCAG
Seq A exon
GTAGGGGTCGCCAAGCCTGTGCCACACTTTATTTTGGAAAAATGCACACCTCTGTCCACGGACCTCCCACCTCCAAAGGGCCACTCATCGGCCTCTGTAACCACTGTTTGTGGATGGCCTGTGAAAAGCAGGACATTGTTTTTCTCTCCTTCCTTGTTGTTATTCTTGTTCAGTCGCCGAGTCCCGCCTGAGTCTTTGCAACCCCATGGACTGTAGCCTGCCCGGCTGCTCTGTCCATAGGATTTCCCAGGCAAGAATACTGCAGTGGGTTGCCATTTCCTTCTCCGGGGAATCTTCCCAGCTAGGGATCGAACCTGAGTCTCCTGCATTGCAGGCAGATTCTTTACTGCGGGAGCCCCCTGTGAAGTCCTTCTCCTCCCTTAGCTGGATCATTAATACCACTTAGCTGTCTTTCCACTAACATCCAGTTAGCTCTCACACTCTTTTTTTTCCAACAGTCATTCCAAAACTTCAGAGGCTTTTCTCAGACTCCCCAGCCCACTACCTCCCCCTTCTGTAACCATTGCAGCTGAAATACAGGCCCGACCTCCTGCCTTCCTCCCTGGGAATTCTGCAGTGTCGACCTGGCGCCTCCCATGTGGATAGTGTTTGGTGATGCCCTTCCGAAAACGTTTAGGGAGGCAAGCGTCCTCCTCTGCACTGTGTTTCGCAG
Seq C2 exon
GCTTGCAGATCCGTACCTGGAGCTGTTCTTGAACTCGGCAAATAAGTACTTCCTGACTGGCTACAGAGTGATCTTCTACATTATGATGGACACCTTCATCAAGCTGCCCCAGATCAAGTGGGAGCCCCTCCGACAGTTCAAAGTGTTCATCGTCACTGAGAGCAGATGGTGGGACAACGACGTCGTGCGCATGAAGAGCTTGGCCAAGCACATTATCTGGGACATCCAGGGCGAGGTCGACTTCCTTTTCAGCATGACCGTCACCCAGATCTTCCAGAACAATGTGGGCGTGGAGGTCCTGGGCGAGTTGGTGGCTCAGCTCCATGGCTGGTGGTACTTCAAGGACCGTGCGAGTTTCCCCTACGAGAGGAGGCCCAAGTCGGCAGCTTACATCCCATTTGGCCAGGGCGATTTCTACTACGATGGTGCATTTGTGGGCGGCACACCCCAGGAGGTCCTGAACCTCGCGGAGGAGTACCTGAATGGAGTCATCCACGACCTCGGACTCAGGTTGAACAGCTCCTACGAAAAACACCTCAACAAATACTTTTTCCTCCGGAAGCCCACCAAGCTCTTATCCCCAGAGTACAACTGGGACGCTGACTTCTACCCGCCACCCCAGGTACAGTACGTCAAGGTGGCCCAGCAGTCCAAAAGGAGACACTGACTCCCCGGGACCGCAGGCCCCACCAGCAATGGTTCCCCCTGGTAGGTGGGATGTCTTCATATGTCCTAGGTTTGAGAGACACAGATGTTTATACTCACCCACAAGACATTTTTCTCCCTGCAATTTTGGGCCATCCAATTTGGCCACTGCAGGATAAAGAATAAAAGGCTGCTTATTGAATGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020249:ENSBTAT00000042840:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(15.9=100)
A:
NA
C2:
PF034148=Glyco_transf_6=PD(76.2=99.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGTGATCACGACCACGAG
R:
CCCAGATAATGTGCTTGGCCA
Band lengths:
350-1023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development