BtaINT0067836 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95871211-95871980:-
Coord C1 exon
chr11:95871921-95871980
Coord A exon
chr11:95871382-95871920
Coord C2 exon
chr11:95871211-95871381
Length
539 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCATCTTTGGTTTTTTTCAGAAA
3' ss Score
9.27
Exon sequences
Seq C1 exon
ACCATAAAGCAGATGCAGCAAAGAATGCTGGAGCTCAAGAAGACTCTGCAAAAGGAACTG
Seq A exon
GTGAGTGACCCTTCTCCCTGCCGCCCGAGCCCTGCTGGCTGCGTGGTCCTCCTCAGGGCCCTCACTGCCTGATGGTGCTCCCTTCCTCCCCTGGGACCGCAGATCTCTGGGAAGTCAGATGTTGGCTGGTGGGGCGTGGCCCTGCCACCTTGAACGTGCTCCTGGAAAGTGGCTCTGTGACCCCTGGCACAAGCCCTCTTTCTGTGAGCCAGTGTGTTTTCTGAGAGGTCAGTGAGGTGATGTGTGTAGCACGCATGCATGCAGAAGGCCAGGTCGGGTGCTCACTGCCCCAGGAGACTAGTCCTGACCTGGATAAAGGAAATGGCTGAACTTCCTCATGTCCCTCTATCCCTCCTCCCAGCCAGCACCCTACCTTCTTAGGTGCTGGCGCTTCCTTCCCAGCTGAGCCCCTGTCACCCTGCTGTGTTCCGTGTGTGGCAAAGAGCTTCAGGTGATCACAGCCTAGGCCAGGTGACTTTCCCGTGTCATTTTCAGATCTGTCTTGAAGGGCTCAATGTAGCATCTTTGGTTTTTTTCAG
Seq C2 exon
AAAATTAGACCTGATAATGAGCTTTTTGAAGTCCGAGAGAAGCCTGGGCCTGAGATGTCAAACTTGGCACCTTCGGTCACAAATAATGCTGACCTGACTGACGCTCGTGAGATCAACTTCGAGTACCTCAAACACGTGGTTTTAAAATTCATGTCCTGTCGCGAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.439
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0146515=GRIP=PU(46.7=36.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATAAAGCAGATGCAGCAA
R:
TCAGATTCGCGACAGGACATG
Band lengths:
230-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development