MmuINT0072143 @ mm10
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39019483-39020130:-
Coord C1 exon
chr2:39020071-39020130
Coord A exon
chr2:39019654-39020070
Coord C2 exon
chr2:39019483-39019653
Length
417 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TCCCTCCCATTGCTTTTCAGAAA
3' ss Score
10.34
Exon sequences
Seq C1 exon
ATTATGAAGCAAATGCAGCAGAGGATGCTGGAACTTAAGAAGACTCTACAGAAAGAGTTG
Seq A exon
GTGAGTGCCCTCCACATAACCAGCCCTGCACACACACACACACCCTACTCCCATACCCTCCCTTGACTCTGGTCCGCCCGGGGTCCTTGGCTGCCTGGTGTGCTCTCTTAGTTGGTTGCAGAGATCAGGTGTGGACTGGTGGGAGTATGGCCTTAGATCTTGAGAAGTGTTCTTGTGACCTTGGGCAGAAGTCTGAGTCTGCCTTCTCCATACCTGCCTGTGTTCTCAAATAGATAGAAAAAATATGACCTAGTTCACTCCTCTCAGTTGACTTCTAGTCAAGGACCCTTTTACCCAGTGATGTAGACAGTCAGTCAAGGAGCAATATATGATCTCTGCTGGGGCTGGAGAATCCCTGTGATCCTAGACCTAGCTCGAGGGGTTTGACACGCATATCTCCCTCCCATTGCTTTTCAG
Seq C2 exon
AAAATCAGACCTGACAGTGAGCTTTTTGAGGTCCGGGAGAAGACAGGCCCTGAGATACCAAATATGGCCCCTTCTGTCACTAATAATACTGACCTGACTGATGCCCGAGAGATCAACTTTGAATACCTTAAACATGTTGTTTTAAAATTCATGTCCTGTCGAGAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754:ENSMUST00000039165:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0146515=GRIP=PU(46.7=36.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGAAGCAAATGCAGCAGAGGA
R:
CTCAGATTCTCGACAGGACATGA
Band lengths:
230-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types