HsaINT0070373 @ hg38
Intron Retention
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124881784-124882569:-
Coord C1 exon
chr9:124882510-124882569
Coord A exon
chr9:124881955-124882509
Coord C2 exon
chr9:124881784-124881954
Length
555 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTTTCCCACTGGTTTTTCAGAAA
3' ss Score
9.25
Exon sequences
Seq C1 exon
ACCATAAAGCAGATGCAGCAGCGGATGCTGGAGCTCCGGAAGACTCTGCAGAAGGAGCTG
Seq A exon
GTGAGTACTCGCATGGGAGCTGGCCCCACTTCCCAGCACTCCCCCTGCTGCCTGTGCCCGGTCCTCCTGAGGTCCCTCGCCGCCTGACTATGCTCCCTCCACCCCCTAATTAATTGCAAGGGATCGCTGGGCAATCCAACGTTAGCTGGTGGGACAGCCTGCCAGCCTGCATGCACCTCTGAAGCAGCTCCGTGGCTACAGCCCTGTTCCTGCCTTCTCTGAGCCTGCATCCTCATCTGGAAGTGGGGTTGCCTGCCACGCCAGCGCAGTGATGCTCTAACAGTGTGTGTGTGTGGCAGAGTGCTTGGCCTGATGCGGGATGCGAGCAGCTTCAGGCCCCAGGGACATGTGTTCTTGCCATGGAAAACGGAATGTCTGAATTTACCCAAACGATGTCACTCCCTCCTCAAGCCTACCTGGAGGTGCTTCCTTCCCAGGTGGGGCCCTTTTTGCCCTACGATAGTGATCATAGTTTGGACCAGGTGAACCTCCCGTGTGATTTTTTCCACCTGTCTCAGAGGGTTCGGTGTAGCATCTTTCCCACTGGTTTTTCAG
Seq C2 exon
AAAATCAGACCCGATAATGAGCTCTTCGAAGTCCGGGAGAAACCTGGACCTGAGATGGCAAACATGGCGCCTTCCGTCACGAATAACACTGACCTGACAGATGCCCGCGAGATCAACTTTGAGTACCTTAAACATGTGGTTTTAAAATTCATGTCTTGTCGCGAATCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935:ENST00000373555:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0146515=GRIP=PU(46.7=36.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATAAAGCAGATGCAGCAGC
R:
CTCGGATTCGCGACAAGACAT
Band lengths:
230-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development