BtaINT0068499 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22373212-22377201:+
Coord C1 exon
chr2:22373212-22373329
Coord A exon
chr2:22373330-22377116
Coord C2 exon
chr2:22377117-22377201
Length
3787 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCTCTATTTCTTATTCTTAGGCC
3' ss Score
9.18
Exon sequences
Seq C1 exon
TCTATCGTCTGTGCTGGAATGATGATATGGAATTTTGTTAAAGAAAAAAATTTTGTTGGACAAATTCTGGTGTTTGTCTTATTGTACAGCTCCCTCTATAGCACCTACCTGTGGACAG
Seq A exon
GTAAGTTGGATCATGAAGAGAAATTTAGGGTCGCCCTCCCCTCCATCGCTTGAGGTTCCAGCTTCTAGTGATCTATTTTAAGTCTAGTGGTACAGGATGAGGGAACCTGCTCAGGCAGTTGTACTCGCTAACTAGGCAGTCTGCAAAGCTGAGTTCTGTTTCGTGATCACTCTTTTTCCTACCTGGGCTCAGATGGTTTCCAGTCACATGTCCTTGTCCTCAGGGCCTTGGGTTCTAGGCCACAGTCCCCAGAGCTCCCCTTTGAGCCATCGAGGGTGCAAGCACTGGAAGCAGGCAGAGAGAGAAGCTATGGGCAGAGGGGGATGAGGATGTGAGTTGTGTACCAGAGGGCGCTTAGAACCCAGCTGAACTGAATGAACAATAATTCTCTTTCTGCCCTAAGCAAATGACTTAACTTGAGGTCTCAGTTTCCTTATGTGTAAGCACCTTACAGGATTATTTTAAGAACTAAATTAAATATGGATGTTTATGCCTGGTACGTGGTAGGCGCTCAACAAATTTAATTGTATTTTAAGTAGAGGGAAGAGCAGTAGTATAAGAACAAGAAAAACAAGTGATTAAAAGGGTATGGAAATAGAAGAATAGTCAGTAAGAAAAAACTATTTTTCATTTCAACTGGCTCCAAAAAGGATATTCAGAATGTTTTAGCACATTGCTCATTTGAAGGAAAACATTAATTTGGGTGCACGCATTCTGGTATGTTTATGAATCAGTCAGTCTGGCTGATTTGTAGTCGTACCACAAATGCAAACCTGTAAAATGGCACATAAAAGGGAATTGTAGAATTGTTGCGCTAGTTATAGCCACTGTTAGGAGGCAGGGGAAGTGGCTGGAGGGAATAGGCCTTTGATTTCATGCCTTCAGGATCAAAAGCAGGACCCATCTAAGTCAACAGCTTTTTGAAGTGAAGCAACAATGCGGTGAGAAATTACAAAATGAATTCAGTGCACACAGGAGGTTTGTAGTTTTTTAAAGGCAAGTACACTTTGCATGGTGTGAGGGTTTTCATGAGGTGTCAAATTAAAAGAGCCTAGAGATTATTTCCAAATACAGAAGAAACAACTTGGTCTCTAATACTTAGGTTTATTAAGGTTAAATTTATAATGAGAATAAGAGAGCAGTAAAGAGCTCAGTTTATCAAAAAGCCCCAAGTTTCTCTGAAATTCTCTTCAAGCATGAATACCAAAATCTCCAAAGAAACTGTTCTGAATTTCCTGACCCCAATGAAGGTGCCCTTTAACCTTAAGATTATTATAACAGAATTTTGAATCTAAAAGGTCATTTTAAATCATTTGGTTCAGCCATTTTCAGTTATACTCATTTGCAAACCACCCTCATGAATTTTCCCATATCTGCATACCACGTGTCCTTTCTTTACCCCTTAAAATTAACTTATTTTTTTAACTTTAATATTACAAATTTAGTCTTATCTCGGTAAAATCCCAGGTTTTATGTATCAGTTAAAATTTTTTCAAGCACGTGTTAAACACATAATTATTAAAAAAAAAAAAAAAAAGTTCATCTTTGTGCCACCTACAGTCTTCTTGCTTTTGGGAACACCAGTCTAGTTAAATCTTTCATTTTGCAAGTGAGGAGAATAAGACTCAAAGAGTTTAGCTGATTGAGGCACGAGCTCTCACAGCTTCGTCAGTGAGACATCCAGGCCTAGACTGAGCCTTCTGTTCATTTGTCAATATTTTCACAAGGCAGGAATAAAATGACAAACATTAGAATTTTCAGGAGTCCCCTCACTATTGTAACACAGTTGGCACTCCTTTGTGATTGGTTGCTTGTTTCCCTGGCACCTTAAACCTGAAACAATAGAGGGTACAAATGCCTTGGGAGGAGCACTGGTATGATAGTATCTCTTGAACTTGAGAACTGAGTGGGTTCCGTATAAAGAAAAACAATTCTCAGGGAGCTCAGTGTTGATTCGTATTATGGATAGCACAGTGTTATTTAATCTGTATAATCTTAAATCTAGATATAAATTCCTTGTTGTTCGGTTGCTAAGTCGTGTCCAACTCTTTGTTACCCCATGAACCCCAGCACTCCAGACTTCCCTGTTCTTCACTATCTCCCAGAGTTTGCTCAAACTCATGTCCATTGAGTCAGTGATGCCATCCAACCATTTTATCCTCTGTCACCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAACATCAGGGTCTTTTCCAGTGAGTCAGCTCTTTGCATCAGCTGGTTGGACATTATATACAGCTAATATACAATTTTAAAACCAATGCAAATTCATTAGATTTAAACAAAAATACAAGCTCAGTAAGTAGTTAGCAACATTAACTGACATGACAAAGGATCTTATTTTGCTAATCTGAATCACAGCTTGAACTCACTTCTCTGATAGGGTTTTTTGGGTTTTTTTGGTTTTTTTTTTTGACCTACCTTTACTTTGATGTGTGGGCTTATGAGCTGGTTATCTCACCGCTTTTCCCTCTTCAGACTACCACAGAACATTAACTTGAACTGTGTTGTGGTATCATTTGGCCTTCACTTGCCTCAAACTTAATATAAAACCAGATATAAACCCTGAAATAATGAGACTGTGCTTTGGTTATAAGATGGTCACCACTGCAAATAAAGCAAAAAGAGTTCATATGTCTCATAGAAACTTCCAGATCCCTAGGAGATCCAACCAGTTCATTCTGAAGGAGATCAGCCCTGGGTGTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTGTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAAGGGACGACAGAGAATGAGATGGCTGGATGGCATCACTGGCTCGATGGATGTGAGTCTGAGTGAACTCCGGGAGTTGATGATGGACAGGGAGGCCTGGTGTGCTGCGATTCATGGGGTCGCAAAGAGTAGGACACGACTGAGCGACTCAGCTGAACTGAACTGAACTGAACGGGTCAACAGACAAGTTTTAGAACACTGAACGGAGCTGAAGGACTTAACCTTCTGTCAGAAGACTGGGTTTCTAGTCTTGCTCTGCCCTCTGCTGGCTGTGTGGCTTGGGCAAACCCTTGTTTACACAGCTATAAAATGAAGGAATTAATTTAAGACAGTGGTCCCTTCCAGCCCTAAAGTTTGAAGCTTCTATAGCTGTGTAAAATTTATAAAATAAGATGTTACTTCTATAAATAATTGGGTATAAAGTATAAGGAAAGCTCATGAAATATTTGTTTTAAAATATCTGTCCAAACGTTTAAAACATTTGTTTCTGTATTAAGTTTATATTAAGGCCCATCATTTAGACTTGGTGAATTTTCCAAAAACAAACCTTTGTGAGAATTACCTATACGTTCTTAGCAACAGCAGAACAGGGGTGTTTTTATTTTTAGAATTGTTCTGTATCCAGTTAAAAATTTTTTTTTTCCCCACAAATATACTTCGATTCCAAACACATGAATCAAAAGAACAAAATGATTTGGGCTTTTTGAAAAAGTCCTCATGTATAAAACAAGAAGATTTTAGTAAAGAAGCAATGTAGGAGGGAAAACAAATGATTTTGAATTAAGAAAACTTGCTTCAAAATATTGGGAAAGCATTTATTTAGAAAGAGTAAATTCTAGGGCAAGAACTACAGACTAGTATTGAAATAAGCTTGGTTAAAGTTCCATGAAGTCTGATCAACATCAAGAGTAATCACCTATCTTTTAATCTCTATTTCTTATTCTTAG
Seq C2 exon
GCCTTCTAGCAATTTCTTTATTTCTTTTGAAAAAGAGAGAAAGGGTACAAATTCCTGTTGGAATCATCATAATATCTGGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636:ENSBTAT00000028831:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]