DreINT0074434 @ danRer10
Intron Retention
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2491018-2492114:+
Coord C1 exon
chr9:2491018-2491138
Coord A exon
chr9:2491139-2492032
Coord C2 exon
chr9:2492033-2492114
Length
894 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTCTGTGGATTGTTTTGCAGGTC
3' ss Score
10.2
Exon sequences
Seq C1 exon
CTATTAGTGTGTGTTGGGATGATCGTGTGGAACTTCGTGGTGAAGCAGGACAGTTTTGTGGCGCAAGTCTTGAGCTTTACTCTGCTGTACGGCTCTCTCTACAGCACCTACATCTGGCCTG
Seq A exon
GTGAGTCTACAGTAAACATTACAGCATCTTCACACTGCAGCATTAAAACAACTTAACATGCATTTACATCTTGTTTGTCTGTTTGAATGTTTTTATTTTTATTGTACAACCCTAAATCATCTTTATTTGTATAGCGCATGTACAATGTGGATTGTGGCAAAGCAGCTTCACATAGAAGATCAAAGTAAATTGAAACGGTGTATTTCAGTTTTCAGTGTTGAAGTTCAGTTTAGTTCAGTTCAGTGTGGTTTATTTTCACTGCTGAGAGTTCAAACACTGAAGAGCAAATCAATCGATGCGCAGCTCTGCAGGTACAATTGGCGAAAGTGAAGAATTAAAAAACCTTGTGAGAAACCAGGCTCAGTTGGGCATGACCATTTCTCCTCTGGCCAAACGTCTTGTGCAGAGCTGCAGTCTAGGCGCCGGAACTGGAGAGCGCTGGACGTCCATCATGAAAGAGATGGGAGAGGTCACCGACTGGTGTACAGGCTGTCCTTTCAGGATCAATGCGAGGACTCGTCTGTCACTGGGGTCTTACAAGGATCAGCCTCATGCTCTTCACTCCTCCATGACCACCACAGCAGCTGCTCAGGATGTGATCTGGTCCAGTAAAAGTATTGCCTTTAGAATGCAATTTTTTGTTTATATTCAAGAAAGAAACTTGAATATGGGTTTTCAGCCATACTGACAACCCTAGCCAACTCACCCAGCCAGCGACCTTCTTGCTGTGAGGCAACAAGCGACAGCCACCGTGTCACCCCTAAATTAATGAGACCTAGAACATTTTTTTTGTCCTCGTATAGAAGGATTTCACATCCTGTCCTAACTTTTTTTCACATGACTGTAAATATTTTGTGTTTAAAGTGTTTGAATGCTCTGTGGATTGTTTTGCAG
Seq C2 exon
GTCTCATCGTCCTCTCTCTGCTCCTCATGAGAAGTGAAGAGGTGAACTTTAGGCCGGGACTCACTGTGATCACCGGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804:ENSDART00000147034:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGTGTTGGGATGATCGTG
R:
CCCCAGCCGGTGATCACAG
Band lengths:
198-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]