GgaINT0049025 @ galGal3
Intron Retention
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18089108-18090278:+
Coord C1 exon
chr7:18089108-18089228
Coord A exon
chr7:18089229-18090193
Coord C2 exon
chr7:18090194-18090278
Length
965 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ATTTCTTTTGTTCTTTGTAGGTT
3' ss Score
11.73
Exon sequences
Seq C1 exon
TTTGTTGCTTGCATTGGAATGGTGATATGGAATTTCACTGTTAAACAAAAAGATGTAACTGTGCAGATCCTAGTATTTATATTTCTCTACAGTTCACTTTATAGCACCTACCTGTGGACAG
Seq A exon
GTATGATTTTTCTAGGCAGAACTAGGTATGATATAAAAGGTTGATGTACTGACATAATTTGATTGTATTCTTCAGAGTAATTGTTTCATTCATTTGTATGTAATTCCACAAACACGCACTTAAAAGCTTTGCCAAGCTGAAGCCCTAGCAATGCAGGGCTAAATGTCAGATGCTGCTTCTGCTATTCAAAGCTCATATACAGACACATCTGGTTTCTCTTTGCCAGTTACAGTACAAGCCTTGCTGGCTTATGAAAAAAAAAGTCAAGAACCTGCTCTCAAAGCAGAAGCAATTACAAATAGAGTAAATGGGGATGGGTTGCCCTTCAGCTACTCAAAAGCTTACTGCCAATTTTTAATTAATGCAGAATGTAAGACTTTAATTTATTCAGCATTAAGGAGATCTTAAAACCTTATGCCTCAAAAAACAGGAAAAACAGAATGAAGGGAGAAACCAAAGGAGCTTTAACATTTCTTCCCTGTGGCAATTGCAATTTCCAAAAACAATGTATGTGTTCTGCAGGTGTAGATGATTAATGAAGAGATTAGTTGTAGTAGGCAGATTTGAAAGATATATGAAGGAACTTGGGGAACTATTTGGGTGTGATTAAAACAGACTTCCTATACCGTTCCTGAGTCCAGAAGTGGAAAGGTTTATTTTGTGTGATGTTTTTGTGCAGTAGGTTGTGTTTGTTTGGCTGAGATACAAGATAGCATATGATTAGTACAGTCTGATGTAAATATATAATATATAATATTATATAATAATAAAAGATTTATTTTTGAAGTTGTGTTTCTCTTTTACTTTCTCAGAATACAATTAGGAAAAAAAGACTATTTTGGAATATTTGAGGTCTGAGAGGCACACTTTGGTTACTAAGCAGGTCACACACTAGAGTGTCTAGAGTCTGTAATTTTCAGTTCTCTTTTTAATAATAAACAAGGCATTTCTTTTGTTCTTTGTAG
Seq C2 exon
GTTTTTTATCCTTCTCTTTGTTTCTGTTGAGGAAGAGAGAAACACTGAAGATTCCCATTGGATTTATAATCATAGCTGGATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209:ENSGALT00000022979:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTGCTTGCATTGGAATGGT
R:
CCCCATCCAGCTATGATTATAAATCC
Band lengths:
206-1171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]